Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00522 ATGCAGACCCACATGTTTCTGAGTCAACATCAATGCTCAATCTTACGCCTTTCTCCCCCCTCCTCACTTCCTCGATTCCGTCGCAACATTTCGTTTTCCACTTCCAGCAGAACCTTGCCATTGCACTTTTCGTGGACCGACCACTTGGATTTTAATGCTTTTCCTCTCTTGATCAGTGGAGGGATATGGGTGGGGTGTTCTCAAAAGAAACATGATCGGGTACAGACTTCAATGTGTACAAGCAGCTCAACTGATCAGAATGCCAGTGGATATAGAGTTAACCCGAATATTTTTTCTCAGGCTATCCAAGCTAAGGTTGCGGTCACAGTTGTATTCTCATGTTGCCTTTTAAGTTTGACACAAGTTACCTCTGCTAAATCTATAGCCAAAACTGTCATAGAGATATTCCCCTTTATCGTTCAAAATTTTGGAGCTAGCTTGCCATTTGCATGTGTATCAAATGCCTTGAATAAACCGACACCCCTTCAATTGGATGTATACCTGCCTGCTTTTCGAGATATCAGATGGAGTTTTGCACGACTGATATACCTATTCAACATTCAACTTGAGAGAAATGTTGGCACGTTCTTAGTGGTGCTCCTTGTGGCATGCATCTCATTTATTTTGATCGGTGGTTTCCTGTTCTTCAAGCTCAGAGGTAGCACTCAATCTCTGGAGGACTGCTTATGGGAAGCATGGGCATGTCTATGTTCGTCATCTACTCACTTGAAACAAACAACACGAGTTGAACGAGTTATAGGCTTCATTCTTGCCATATGGGGCATATTATTCTACTCTCGTCTACTTAGCACAATGACAGAGCAGTTTAGGCATAACATGCAAAGGCTGAGGGAAGGTGCACAAGTTCAAGTTTTGGAATCTGATCACATCATCATTTGTGGTGTCAATAGTCATTTGACTTTTATACTGAAGCAGCTAAACAAATACCATGAATTTGCTGTTCGCTTAGGCACTGCAACTGCTAGGAGACAGAGAATTCTTCTCATGTCAGATCTTCCAAGGAAACAAATGGACAAGTTAGCTGATAATATTGCGAAAGATCTTTACCACATCGATATTCTTACAAAGAGTTGTAGTCTCAGCTTAACTAAATCATTTGAAAGAGCTGCTGCCAGTATGGCACGAGCGGTAATCATACTGCCAACAAAAGGAGACCGGTATGAAGTTGATACAGATGCATTTCTCTCTGTTCTTGCACTTCAACCCATTGAAAATATGGACTCCATCCCAACTATTGTTGAGGTTTCTAGTTCCAACACATGTGAGCTCTTGAAGTCCGTCACAGGACTGAAAGTAGAGCCAGTGGAGAATGTTGCCTCTAAATTATTTGTCCAGTGTTCACGGCAAAAGGGACTCATAAAAATTTACAGACACTTGTTGAACTATCGGAAAAATGTATTTAATCTATTCAGTTCCCCCAATTTTGTTGGTCTAAATTATAAAGAATTACGCCAAGGATTTCATGAGGCAGTTGTGTGTGGTATCCATAGAAATGGGAAGATACACTTCCATCCAAATGATGATGAGATTTTGCGGCAAAATGACAAGGTTCTGTTAATTGCACCTCTCCTTGGAGGACATAAGGGAACGGGTGGTCATACAAATGTGACCAAAGAAGGAAGTAATACCATTAAAAAACTGGAAAATATTAAAAACAATAATGTAGGTTTACTTGATTCTCTGGAAACAGATAGAAAGGGATTTGAGAATATCATCGAACATCCAACAAAACCTTCCTTCAAGGCTTCAAAGTGGACTGAAGGACCGAAAGAATGCATACTTTTGCTTGGTTGGCGCCCAGATGTGGTTGATATGATTGAAGAATATAATAACTATCTTGGACCTGGTAGTGTATTGGAAATTTTATCAGATGCATCATTTGAAGAAAGAGAGAGGGCTAATAAAGCTGCAGACCACAAGAATTTAAAAAATGTCAGAGTTTCTCACAGGATAGGAAATCCGATGGACTATGATACCTTAGAGGAAACTTTAATTAATATTAAGAGGTCTTTCAATAAAAATGAAGATGTTCCTTTGACCATTGCGGTGATATCCGACAGAGAATGGCTTCTTGGGGATCCATCTAGGGCGGACAAACACTCAGTATATACTCTTCTCCTTGCTGAAAGTATCTGTAAAAAGCATGGAGTTAAGGTACAAAATCTTGTTGCGGAGATTGTTGACTCCAAATTGGGAAAACAAATAACCAGAATAAAACCTTCCCTGACATACATTGCAGCAGAGGAAATAATGAGTCTTGTCACAGCTCAAGTGGCAGAGGATAGTGAATTGAACGAAGTATGGAAAGATATTTTAAATGCTGAGGGTGATGAAATTTATGTGAAGGATATCTGTGGCTACATGAAACAAGGGGAGGATCTTTCATTTTCGGAACTTTCTGAAAGAGCACATCTAAAGCAAGAAGTTGCCATTGGTTATATTAAAAACAATAGGAAGGTAATCAATCCCATTCCCAAGTCTGAACCGCTTTCTCTTGAATTGACAGATTCGTTAATCGTATAA 2544 39.82 MQTHMFLSQHQCSILRLSPPSSLPRFRRNISFSTSSRTLPLHFSWTDHLDFNAFPLLISGGIWVGCSQKKHDRVQTSMCTSSSTDQNASGYRVNPNIFSQAIQAKVAVTVVFSCCLLSLTQVTSAKSIAKTVIEIFPFIVQNFGASLPFACVSNALNKPTPLQLDVYLPAFRDIRWSFARLIYLFNIQLERNVGTFLVVLLVACISFILIGGFLFFKLRGSTQSLEDCLWEAWACLCSSSTHLKQTTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQRLREGAQVQVLESDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLMSDLPRKQMDKLADNIAKDLYHIDILTKSCSLSLTKSFERAAASMARAVIILPTKGDRYEVDTDAFLSVLALQPIENMDSIPTIVEVSSSNTCELLKSVTGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLFSSPNFVGLNYKELRQGFHEAVVCGIHRNGKIHFHPNDDEILRQNDKVLLIAPLLGGHKGTGGHTNVTKEGSNTIKKLENIKNNNVGLLDSLETDRKGFENIIEHPTKPSFKASKWTEGPKECILLLGWRPDVVDMIEEYNNYLGPGSVLEILSDASFEERERANKAADHKNLKNVRVSHRIGNPMDYDTLEETLINIKRSFNKNEDVPLTIAVISDREWLLGDPSRADKHSVYTLLLAESICKKHGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEIMSLVTAQVAEDSELNEVWKDILNAEGDEIYVKDICGYMKQGEDLSFSELSERAHLKQEVAIGYIKNNRKVINPIPKSEPLSLELTDSLIV* 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3540525 3550367 - Chy6G110500.1 Chy06g00522 228231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00522 847 SUPERFAMILY TrkA C-terminal domain-like 481 529 IPR036721 GO:0006813
Chy06g00522 847 Gene3D - 287 439 - -
Chy06g00522 847 PANTHER ION CHANNEL POLLUX-RELATED 21 847 IPR044849 GO:0006811
Chy06g00522 847 Pfam Castor and Pollux, part of voltage-gated ion channel 443 530 IPR010420 -
Chy06g00522 847 PANTHER ION CHANNEL POLLUX-LIKE 1-RELATED 21 847 - -
Chy06g00522 847 SUPERFAMILY Voltage-gated potassium channels 178 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00522 - - - csv:101217088 1620.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00522 Chy-Chr6:3540525 Chy10g00766 Chy-Chr10:13769809 1.19E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g599 . . . . . . . . . . Cma06g01348 Cma14g01772 Car06g01169 Car14g01594 . Cpe08g00303 Cpe03g01483 . . . . . . . . . . . . . . . . Cone7ag0291 Cone4ag0286 Lsi05g01659 . . Cme06g00552 Blo02g00601 . . Bda13g00094 . . . . . Cmo06g01360 Cmo14g01808 . . . . . . . . . . . . . . . . . . . . . Csa03g01269 Chy06g00522 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010595 1 0 1 0 0 1 2 0 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00522 Chy_Chr06 FPKM 24.633236 22.454012 26.659473 26.970537 22.151073 20.417068 20.865191 50.024532 44.642208 46.16386