Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00523 ATGTATTCCCCAATCCGCCATTCCTCCTCTATTCTCCTGTTATTTTCCTTCTTCCTCTTCTTCCTCTTTCATTGCTCCACCGCCCAAGCCCCCGACGCCGATGGCTACACCTGCTCCGCCAACCAAACTGCCAACCCATGTCAGGCCTATGTCTTCTACAGAGCCACCCTTCCCAACTTCCTCGACTTGGCTGCCATTGCTGACCTCTTCTGGGTCAGCCGCCTCCAAATTTCTCGTCCCAGCAACATCTCTGACTCCAACGCTACTTTCCCTCTCCTCTCCGGCCAACCTCTCTTCATTCCCATCACCTGCTCCTGCCACTCTGTCAACGCCTCCGTCAGTATCTCCTACGCTAATCTCTCCTACAAAATCAACGCCGGCGACAATTTCTGGCTCGTCTCCACCTCCAAATTTCAAAATCTCACCACTTTCCAATCCGTGGAAATCGTCAATCCCACTTTAATCGCAACCAATCTCTCCATCGGCGTCGACGTCGTTTTCCCCATCTTCTGCAAATGCCCTAATCCCACTCAACTCCGAAATCGGGTCAATTTCATGATCTCTTACGTGATTCAGCCCGCCGATACTCTGTCCTCCATAGCTTCAAGGTTTGGAGTACAAACATCGGAAATCAGAGACGCGAATTGGCCAAACCCGCAACCGTTCGAGACAATTTTTATCCCAGTGAGTCGTTTTCCCAATTTGACACAGCCCATTGTGTTACCGCCGTCTCCGGAGCAGGCACCGGCGCCGGTGAGAGAAGAGAAAAACAGAGCAGTGACAGGGCTGGCGATTGGGTTGGGGATTGTTGGGTTTTTGCTGATTTTGGCGGTGTGTTTGTTGGTTTTTGGAGTGGGGAAGAGGAGGAAGAATGAGAGGGAAATGGAGGAAAGATTTGAGAAACAGAGAGTGCAGGATGATGGGATTTGGAAAGCGAAAAGGAAGGAAATGGAGGTTGATTTAATGGCGGATGTGTCTGACTGTTTGGATAAATACAGAGTGTTTAAAATTGAGGAGCTTAATGAAGCGACGGATGGATTTAGCGAGAGTAGCTTGATTCAAGGATCGGTTTACAAGGGAACAATCGGTGGAGTTGAATTTGCTATCAAGAAGATGAAGTGGAATGCCTATGAACAGCTCAAGATCTTGCAGAAGGTAAACCATGGTAATCTAGTGAAGCTTGAAGGCTTTTGCGTTGACCCTGAAGATGCAACCTGCTACCTAATTTATGAATATGTAGAGAATGGATGCAATGCCATAACTATGCACATTGTTGGGACTCAAGGCTATATAGCACCGGAATACATAGCCGATGGAGTCGTGTCGACGAAGATGGACATTTTCTCGTTCGGAGTTGTTCTGCTCGAGCTGATCTCTGGGAAGGAGGCCATTGACGACCAAGGAGGTGCTCTATGGATGAGAGCCAGTAATGAATTTTTGGACGGAAAGGAGAAGGATAAGTTGGAGAGTCTGAAGAGTTGGATTGATGAAGCTCTTTTCGAGCAATCTTGCCCGATGGAGAGTTTGATGGATGCGATGAATGTGGCTGTTAGTTGCTTGCAGAAGGATCCAACAAAGAGGCCGAGCATGGTGGAGGTGGTTTATGCACTAAGCAAGACCGATGACGCCGTGTTCGATTTCTCTGATGATAATTTATCAGCTCCTCCCTTAACAGCTAGGTAA 1683 48.13 MYSPIRHSSSILLLFSFFLFFLFHCSTAQAPDADGYTCSANQTANPCQAYVFYRATLPNFLDLAAIADLFWVSRLQISRPSNISDSNATFPLLSGQPLFIPITCSCHSVNASVSISYANLSYKINAGDNFWLVSTSKFQNLTTFQSVEIVNPTLIATNLSIGVDVVFPIFCKCPNPTQLRNRVNFMISYVIQPADTLSSIASRFGVQTSEIRDANWPNPQPFETIFIPVSRFPNLTQPIVLPPSPEQAPAPVREEKNRAVTGLAIGLGIVGFLLILAVCLLVFGVGKRRKNEREMEERFEKQRVQDDGIWKAKRKEMEVDLMADVSDCLDKYRVFKIEELNEATDGFSESSLIQGSVYKGTIGGVEFAIKKMKWNAYEQLKILQKVNHGNLVKLEGFCVDPEDATCYLIYEYVENGCNAITMHIVGTQGYIAPEYIADGVVSTKMDIFSFGVVLLELISGKEAIDDQGGALWMRASNEFLDGKEKDKLESLKSWIDEALFEQSCPMESLMDAMNVAVSCLQKDPTKRPSMVEVVYALSKTDDAVFDFSDDNLSAPPLTAR* 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3554361 3557955 - Chy6G110510.1 Chy06g00523 228232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00523 560 Pfam Protein kinase domain 421 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00523 560 CDD LysM 187 215 IPR018392 -
Chy06g00523 560 Gene3D LysM domain 186 228 IPR036779 -
Chy06g00523 560 ProSiteProfiles LysM domain profile. 187 233 IPR018392 -
Chy06g00523 560 SMART LysM_2 188 228 IPR018392 -
Chy06g00523 560 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 416 - -
Chy06g00523 560 Gene3D Phosphorylase Kinase; domain 1 317 409 - -
Chy06g00523 560 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 416 554 - -
Chy06g00523 560 Pfam LysM domain 189 218 IPR018392 -
Chy06g00523 560 SUPERFAMILY LysM domain 187 219 IPR036779 -
Chy06g00523 560 Gene3D Transferase(Phosphotransferase) domain 1 410 551 - -
Chy06g00523 560 PANTHER - 7 416 - -
Chy06g00523 560 PANTHER - 416 554 - -
Chy06g00523 560 SUPERFAMILY Protein kinase-like (PK-like) 331 537 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00523 - - - csv:101217327 766.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00813 Chy-Chr3:11298399 Chy06g00523 Chy-Chr6:3554361 1.62E-07 dispersed
Chy06g00523 Chy-Chr6:3554361 Chy11g00169 Chy-Chr11:1646784 1.15E-75 dispersed
Chy06g00523 Chy-Chr6:3554361 Chy02g00965 Chy-Chr2:6425884 2.00E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71313 PF00069 Pkinase 1.30E-11 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00523 Chy_Chr06 FPKM 12.173077 13.617107 18.566357 16.17872 10.569109 13.595572 13.211813 30.755852 29.882339 37.764603