Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00533 ATGGGAAATGAGATGGGAAACAATAACACATCTGAGTTTAGAGAGGAAGAAAAGGAAAAAGCCGAAGGTCCAGAAATTTTTTTACTAGAAGGCGAGAAAAATGAAGGAGAAGCCGATGAAGTTGCAGGCTTCAGCCAAAAAGAGGCAAGGCCGAGTTCTGGTGAGGCAGATAAAGTAAATGGTGATCATCATGTGAACGAAAAAGAGGAAGAGAAAAATAAAGTATGTAATATAGAAGAGTTTCAAGTGGTTTCTGAAAACTTACATGATCGAACTATAGAGGACAATGTGGTCGAGGTCAAATCTAAAGAAAACAAAGAAATGGAGTTCGACTCAGAAGAGAATAGATCCGATGGAAATGAGCATGAAAAGCAGGCTTCAAATCAGAAAGGGGAAGAAGAGAAGAGAGGTTCCAATTTAAACACAGCAGTACTTCCATTGAATGAGCCAAAACTTGAGAAGACTGAAGAAAAATGCAAGGATGCTTTGGAATCGAGCTCGAAAAACACTTGCCATTCAGCAAATTGTGCCAAGCCAGATTCAGAAGAAAACACCAATATGGATCAAGTTATTGATACTGACCGAGATACTAATAAGGAAAATGATGGAGAGAAAGGAAAGGATTCCATCATCGACATGATAACACATGCATCAGAAGATGAAAAATCTGAAAAGACATCAGATGTTAATATCGATCAAGTTATTGATAATGATCGAGATACAGACAAGGAAAATGATGGAGAAAGTGGAAGAGGTTCAAGCTTCAACACAACACATGCACCAAAGGATCCAAAATCTGAAATGAATTCAGACTTCGATTCTGATCAAGTTATTGATACTGATAAGGAAAACGATGAAGAGAGGAGAAAGGGTTCCAACTTCGAGATGATAAATTCATCAGAAAATCCAAAATCTGAAAAAACTTCAAATTTGGATACTAATCAAGTTGTTCGTACTGATTGGGACGCGGATAAGGAAAACGATGAACAGAGGGGCAACAGCTCCAACTTCGACATGTTAATAGATGCATCAAAAAATCCAAATTCTGAAAATAGTTCAGATCTTAGGTCTATTCAGCACGAGCCACCTGAAACCAACGCTGAATCATTGACAGGATCGAGTGATGATGGAGACACGGATATGGAGAATAAAAAGGGTGATCTAGTAGAGCCAAGGCAATGCCATGGGTATACAGTGCCAGCAGCCAAAAATGTTGATACTAAAGATAAAGGTACTGTGACCGATTTGATATGTCATAATACTTCATGCTCGCTGACAGAAGAGTGTCTGGTGATAGAATCAGTTCCTGAGGTTGAAAACAAGGAAGAATTCCAATTAAGAGAAGAACATTTAGGAACTGAAACAGTCGATGAAGACAATATTCCAACCCAATCTAAGATTTCAAATGAGGTCCAAGAGGAATTTAACACAACTGAGTCGCACTCTGAGAACAATACAGAAGAAGCTGAAGTTGCTCCTGAATTTGTTTCAGAGAACAAGAACGAGGCTCCTGTAGAGGATTGCGAGGATTCAGATGGAGAATATCTGGAAATTTCCGAACAAGGTATGGAGGATATTTTAACTTTATCCATTGGAGATTGCAAGCATAAGAATGAGGAGATGGGAAAGACAACTGAACTTTCAACAAACAATGAACACGAAGTGGAAAGACGAGAACCAGATGAAAGCCTATTTGAGCCTATTTTGGGGTTTCAATCACAAACTCAGCAAAAGGAAACTACAATAGCTTTTCAAACTGCAGAAGGTACAGATGAATCGATTTCGGCACCGAGGCAAGAAACCGATACAGAAACTGAAAAATCCAAGAGCAATCCCTCGGATTCCCCAAGTTATACCCAAACAGCTTCATCAACACCCACAGAAACTAAACCATCGACAAATCCAATCGACGAACAGAGTTTAGCAACACTTCCATTCTCCACATTTGGAGGAGAAGATCAAGATTCTCCAGGAAGAACAAGCAATGAATCAATTTCCGAAAATTCAATTGGTCATATCGAGATGCGTAAATCACCTAGCTTCAATATAGATATCCAAATCGAAGGAAAAACAGGAGAAACAGAGAAAACTCCATTGCTATACCAAATTAAGACAATCGAAGACTTACCAAATCTGCAGGAGATTAGCTTCCCAAATCCAATGGAGAAACGAGTAGTGAAGTTAGGAAGAAGCGACTCAGAGAAATCGAGGCCTTCTTTCCCAGGATTCGTGAAAGAAAAAGAAGAATCAGGGATGGAATTCAAAGCAATCGATCAAAATAACTTCGTCAGCGAGAAGAAGGTAGCGAAAAACTTACCACCGCCATCGCCGATCCGTAAAGGGAAGCGCAGAACGAAATCCCTCATTTTTGGGACCTGCATCTGCTGTGCTACAGCAATCAATTGA 2406 39.61 MGNEMGNNNTSEFREEEKEKAEGPEIFLLEGEKNEGEADEVAGFSQKEARPSSGEADKVNGDHHVNEKEEEKNKVCNIEEFQVVSENLHDRTIEDNVVEVKSKENKEMEFDSEENRSDGNEHEKQASNQKGEEEKRGSNLNTAVLPLNEPKLEKTEEKCKDALESSSKNTCHSANCAKPDSEENTNMDQVIDTDRDTNKENDGEKGKDSIIDMITHASEDEKSEKTSDVNIDQVIDNDRDTDKENDGESGRGSSFNTTHAPKDPKSEMNSDFDSDQVIDTDKENDEERRKGSNFEMINSSENPKSEKTSNLDTNQVVRTDWDADKENDEQRGNSSNFDMLIDASKNPNSENSSDLRSIQHEPPETNAESLTGSSDDGDTDMENKKGDLVEPRQCHGYTVPAAKNVDTKDKGTVTDLICHNTSCSLTEECLVIESVPEVENKEEFQLREEHLGTETVDEDNIPTQSKISNEVQEEFNTTESHSENNTEEAEVAPEFVSENKNEAPVEDCEDSDGEYLEISEQGMEDILTLSIGDCKHKNEEMGKTTELSTNNEHEVERREPDESLFEPILGFQSQTQQKETTIAFQTAEGTDESISAPRQETDTETEKSKSNPSDSPSYTQTASSTPTETKPSTNPIDEQSLATLPFSTFGGEDQDSPGRTSNESISENSIGHIEMRKSPSFNIDIQIEGKTGETEKTPLLYQIKTIEDLPNLQEISFPNPMEKRVVKLGRSDSEKSRPSFPGFVKEKEESGMEFKAIDQNNFVSEKKVAKNLPPPSPIRKGKRRTKSLIFGTCICCATAIN* 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3623106 3625796 - Chy6G110610.1 Chy06g00533 228242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00533 801 MobiDBLite consensus disorder prediction 1 72 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 318 332 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 295 317 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 333 376 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 264 294 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 150 165 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 51 72 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 166 186 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 568 594 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 467 511 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 188 249 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 377 391 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 537 677 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 10 44 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 728 750 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 95 395 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 537 564 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 610 675 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 95 137 - -
Chy06g00533 801 MobiDBLite consensus disorder prediction 595 609 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00533 - - - csv:105434833 1461.05
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g578 . . . . . . . . . . Cma06g01356 . Car06g01177 . Sed02g1355 . . Bhi01g00747 Tan10g0777 Cmetu06g1274 . Hepe05g1595 . Lcy11g1592 . . . . . . . . . . . Lsi05g01648 . . Cme06g00565 . . . . . . . . . Cmo06g01371 . . . . . . . . . . . . . . . . . . . . . . Csa03g01281 Chy06g00533 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008657 0 1 0 0 0 1 2 1 1 1 1 1 4 1 1 3 1 0 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00533 Chy_Chr06 FPKM 3.666667 5.468363 14.524856 13.350044 6.686212 6.247081 6.530955 23.858248 28.755507 24.268759