Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00537 ATGGCTTCAGCTGCGTTCATCGAGCCTCTCCCTGTTCTTGAGTTTGTTGCTCAGCTTCTAGGGAAAGATGTTTTGTCACGGCCACTATCCGACTCCGATCGAGTAAAGATTAAAAAGGCTCTGAGAGGGGTGAAAGTTGAAGTAACACACCGTGGAAATGTTAGGCGGAAGTATCGAGTTTCGGGTCTGACATCACAGCCTACAAGAGAATTAGTCTTTCCTGTTGATGACAACTCAACCATGAAGTCAGTTGTTGAATACTTCCAGGAGATGTATGGCTTCACCATTCAGCATGCACATCTCCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGCAAATTATTTGCCAATGGAGGCCTGCAAAATTGTGGGGGGCCAAAGATATACAAAGAGATTGAATGAAAAGCAAATAACAGCACTTCTAAAAGTCACATGTCAAAGACCTAGGGATCGAGAAAACGACATTTTGCAGACTGTCCAACATAACGCTTATGACAATGATCCTTATGCTAAAGAGTTTGGGATTAAAATCAGTGAAAAATTGGCTTCCGTTGAAGCTAGAATTCTTCCTCCTCCATGGCTAAAATATCATGATACTGGTAAAGAGAAGGATTGTTTGCCTCAAGTGGGTCAATGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAACCGGTGGGCATGTATCAACTTCTCTAGGAGCGTGCAAGAGAGCGTAGCTCGTGGGTTTTGTTCTGAACTTGCTCAGATGTGTCAAGTGTCTGGAATGGAATTCAATCCAGAACCAGTTATTCCAATATACAATGCAAGGCCAGAACAGGTAGAGAAAGCTTTGAAGCATGTGTATCATGCTTCCATGAACAAGACAAAAGGGAAAGAGTTGGAGTTATTATTAGCTATTTTACCTGACAATAATGGGTCGCTTTATGGTGATCTTAAGCGAATTTGTGAAACTGATCTTGGTTTAATATCACAATGCTGTCTTACAAAGCACGTGTTCAAGATAAGCAAGCAATACCTTGCTAATGTGTCACTGAAGATCAATGTCAAGGACTTCATAAGGCTCTACTTATCCAATAATGAAAACCATAAAATCACTTTGGATTCTAATGAGTTTTGTTTGCTCTTCTTCTTTTCCTCTTTGCTACCAATTCTATCTCAGATGGGTGGAAGAAACACTGTTCTTCTAGATGCTATCAGCTGCAGGATACCACTTGTGAGTGACATACCAACAATTATATTTGGAGCGGACGTGACCCATCCAGAGAATGGCGAAGATTCCAGCCCTTCAATAGCTGCTGTAGTAGCCTCTCAGGATTGGCCTGAAGTGACAAAATATGCTGGGCTAGTATGTGCTCAAGCTCATAGACAAGAACTTATACAAGACTTGTACAAAACTTGGCAGGATCCTGTCCGTGGCACTGTCAGTGGTGGCATGATCAGAAAGGAAATGGATGGTGCATATATTGCTTCTTCTTTGAATATTGATTTATATGGTGCCAATTATTGTCACAGGGATCTTCTAATTTCGTTTAGGAAAGCAACAGGGCAGAAGCCTCTCAGGATAATATTTTACAGGGACGGCGTGAGCGAAGGACAATTTTATCAAGTATTACTTTATGAGTTGGATGCAATCAGGAAGGCATGTGCTTCTTTAGAACCGAATTACCAACCACCCGTAACATTCATTGTCGTACAAAAGCGACACCACACCCGATTATTTGCCAACAACTATAGAGATAGAAGTAGCACAGACAAGAGTGGGAACATTTTACCTGGAACCGTAGTCGACTCCAAAATATGCCACCCAACAGAATTTGATTTCTATCTCTGTAGTCATGCTGGAATTCAGGGAACAAGTCGGCCAGCTCACTACCATGTTCTTTGGGATGAAAACAATTTCACTGCAGATGGAATTCAGTCGTTAACAAACAATCTTTGCTACACTTATGCAAGATGTACACGTTCAGTTTCTGTCGTCCCTCCAGCATACTATGCACATTTAGCTGCATTCCGAGCTCGATTCTACATGGAACCAGAGATGCAGGAGAATGGCTCAGCTGGTCGTTCGGCCAAGAGTACACGTGTTACCGGAGAATGTGGGGTTCGTCCTTTGCCAGCTCTAAAAGAAAACGTGAAGAGAGTAATGTTTTACTGTTAG 2166 41.92 MASAAFIEPLPVLEFVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNAYDNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNPEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKDFIRLYLSNNENHKITLDSNEFCLLFFFSSLLPILSQMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRKEMDGAYIASSLNIDLYGANYCHRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNYRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSAGRSAKSTRVTGECGVRPLPALKENVKRVMFYC* 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3652652 3657350 + Chy6G110650.1 Chy06g00537 228246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00537 721 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 384 720 - -
Chy06g00537 721 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 353 - -
Chy06g00537 721 Gene3D - 404 721 IPR036397 GO:0003676
Chy06g00537 721 ProSiteProfiles PAZ domain profile. 10 124 IPR003100 GO:0005515
Chy06g00537 721 SMART PAZ_2_a_3 14 146 IPR003100 GO:0005515
Chy06g00537 721 Pfam Mid domain of argonaute 207 284 IPR032473 -
Chy06g00537 721 Gene3D paz domain 3 128 - -
Chy06g00537 721 SUPERFAMILY Ribonuclease H-like 286 680 IPR012337 -
Chy06g00537 721 CDD PAZ_argonaute_like 9 123 - -
Chy06g00537 721 Gene3D - 188 353 - -
Chy06g00537 721 PANTHER PROTEIN ARGONAUTE 10 384 720 - -
Chy06g00537 721 PANTHER PROTEIN ARGONAUTE 10 1 353 - -
Chy06g00537 721 CDD Piwi_ago-like 168 679 IPR045246 -
Chy06g00537 721 Pfam Argonaute linker 2 domain 150 196 IPR032472 -
Chy06g00537 721 SMART Piwi_a_2 298 680 IPR003165 GO:0003676
Chy06g00537 721 Pfam Piwi domain 299 354 IPR003165 GO:0003676
Chy06g00537 721 Pfam Piwi domain 386 679 IPR003165 GO:0003676
Chy06g00537 721 ProSiteProfiles Piwi domain profile. 298 680 IPR003165 GO:0003676
Chy06g00537 721 SUPERFAMILY PAZ domain 4 164 IPR036085 GO:0005515
Chy06g00537 721 Pfam PAZ domain 36 140 IPR003100 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00537 Chy-Chr6:3652652 Chy12g01567 Chy-Chr12:19234555 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00537 K11593 - csv:101221352 1312.75