Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00540 ATGTTGCTCAGAGCGGAAGAACAAAGCCAACAGCTACAGCTTGTAGAGCGCGAAGATATTGAGGATGAAGATGATTTGTTTGAAGCGATTGATAAACTAACTTCTCATGGAATTAATGCTGGAGACGTGAAGAAGCTTCAGGACGCAGGGATATACACCTGCAACGGTTTGATGATGCACACGAAGAAGCACTTGACCGGGATAAAAGGCTTATCCGAGGCGAAGGTTGATAAGATATGCGAAGCTGCTGAAAAGCTAGTGAATTTTGGTTATATCACTGGAAGCGATGCTCTGCTCAAGAGAAAGTCCGTGGTTCGCATTACCACTGGAAGCCAGGCTCTCGATGAACTCTTAGGAGGCAAGCCTGCTTCACGACGTGGAATTGAAACTCTAGCAATCACGGAAGCTTTTGGAGAATTCAGGTCCGGGAAAACGCAACTCGCGCATACTCTATGCGTCTCTACGCAGCTTCCTACCAGCATGCGGGGAGGGAATGGAAAGGTTGCATACATTGACACTGAAGGCACTTTCCGACCTGATCGAATTGTGCCCATAGCTGAAAGATTTGGCATGGACCCAGGAGCTGTTCTTGACAATATCATATATGCTCGTGCCTACACCTACGAACACCAGCATAACCTTCTGCTCGGTCTTGCTGCAAAAATGTCTGAAGAGCCATTTAAGCTTCTGATTGTCGACTCTATCATCGCACTTTTTCGAGTGGATTTCACCGGAAGAGGAGAACTTGCAGAGCGCCAGCAAAAATTGGCACAGATGCTGTCCCGATTAATTAAAATTGCAGAAGAGTTCAATGTAGCAGTTTACATGACCAACCAAGTCGTTGCAGACCCAGGTGGAGGAGTGTTTGTTTCAGATCCCAAAAAACCAGCAGGAGGCCATGTTCTTGCCCATGCCGCTACAGTTAGATTGATGTTCAGGAAAGGCAAAGGTGAACAACGGATCTGTAAGGTGTTCGATGCCCCTAATTTGCCAGAGTCTGAAGCTATATCCTTAACTCACATCACCTCACACTTGACACTTCCATTTGTTATTATTCTCAAGATTTCTTAA 1071 45.94 MLLRAEEQSQQLQLVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVNFGYITGSDALLKRKSVVRITTGSQALDELLGGKPASRRGIETLAITEAFGEFRSGKTQLAHTLCVSTQLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQHNLLLGLAAKMSEEPFKLLIVDSIIALFRVDFTGRGELAERQQKLAQMLSRLIKIAEEFNVAVYMTNQVVADPGGGVFVSDPKKPAGGHVLAHAATVRLMFRKGKGEQRICKVFDAPNLPESEAISLTHITSHLTLPFVIILKIS* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3684383 3687335 + Chy6G110680.1 Chy06g00540 228249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00540 356 SUPERFAMILY Rad51 N-terminal domain-like 22 89 IPR010995 GO:0000166
Chy06g00540 356 CDD Rad51_DMC1_radA 107 335 IPR033925 GO:0003677
Chy06g00540 356 ProSiteProfiles RecA family profile 2. 286 335 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Chy06g00540 356 PANTHER MEIOTIC RECOMBINATION PROTEIN DMC1-LIKE PROTEIN 14 338 - -
Chy06g00540 356 Gene3D - 7 89 - -
Chy06g00540 356 PIRSF Rad51 16 342 IPR016467 -
Chy06g00540 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 335 IPR027417 -
Chy06g00540 356 TIGRFAM recomb_DMC1: meiotic recombinase Dmc1 30 336 IPR011940 GO:0000150|GO:0003677|GO:0005634|GO:0007131
Chy06g00540 356 Pfam Rad51 90 336 IPR013632 -
Chy06g00540 356 Gene3D - 90 351 IPR027417 -
Chy06g00540 356 ProSiteProfiles RecA family profile 1. 103 280 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Chy06g00540 356 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 14 338 - -
Chy06g00540 356 SMART AAA_5 130 316 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00540 K10872 DMC1; meiotic recombination protein DMC1 - csv:101221817 635.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01307 Chy-Chr2:9643756 Chy06g00540 Chy-Chr6:3684383 2.97E-108 dispersed
Chy06g00252 Chy-Chr6:1692492 Chy06g00540 Chy-Chr6:3684383 8.54E-27 dispersed
Chy06g00540 Chy-Chr6:3684383 Chy11g01295 Chy-Chr11:19181700 1.61E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g564 . . . . . Bpe14g01213 . . . . Cma06g01366 Cma14g01751 Car06g01181 . Sed12g0976 Cpe08g00289 Cpe03g01470 Bhi01g00755 Tan10g0784 Cmetu06g1587 . Hepe05g1591 . . . . . . . . . . . . Cone4ag0274 Lsi05g01643 . . Cme06g00570 . Blo07g00234 Bda11g00600 . . . Bma02g00822 Bma06g01573 . Cmo06g01378 Cmo14g01788 . . . . . . . . . . . . . Cla05g00504 Cam05g0555 Cec05g0567 Cco05g0565 Clacu05g0551 Cmu05g0523 Cre05g0592 . Csa03g01286 Chy06g00540 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010242 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00540 Chy_Chr06 FPKM 16.435839 18.682571 25.656994 25.395403 17.587219 18.114573 19.073753 27.709442 26.330269 25.270906