Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00543 ATGGCCGCTTCTGCTGTGATGCAATCCATTCTGTCAACCACGGCTAGTCGAGGTGTTTATAGGACAACGACGAATCGTCTACTCCCGGCGGCTGTTCGACCTTGCTCCCGGAGTACGGCCGCCTTTCGAGTGCGATGCATGGCGGAGGAGGATCAGAGAGAGCAAGCGATTCCATCATCGATCCCACCGTCACCTCCCAAACCAGAGCCATCTCCCTCGCCACCGTCTAAGGTGACGAGTACGAAACTAACAGACATTTTGGCGTTCAGCGGGCCAGGGCCAGAGAGGATCAATGGGCGGCTAGCGATGATCGGGTTCGTGGCTGCCCTGGCAGTTGAAGTATCGAAAGGGCAGGACGTGTTCGAGCAGATAGCGAACGGAGGGATTCCATGGTTTGTGGGAACGAGCGTGGTTCTGACGTTGGCATCGTTGATTCCATTGTTTAGAGGAGTGAGCGCTGAGTCGAACTCGAAGGGGATAATGAGTTCTAACGCCGAGCTGTGGAATGGGAGGTTCGCTATGTTGGGCCTTGTTGCTTTGGCCTTCACTGAATATGTTAAAGGTGGAAGCCTTGTATAA 579 54.4 MAASAVMQSILSTTASRGVYRTTTNRLLPAAVRPCSRSTAAFRVRCMAEEDQREQAIPSSIPPSPPKPEPSPSPPSKVTSTKLTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESNSKGIMSSNAELWNGRFAMLGLVALAFTEYVKGGSLV* 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3699459 3700221 + Chy6G110710.1 Chy06g00543 228252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00543 192 MobiDBLite consensus disorder prediction 59 75 - -
Chy06g00543 192 PANTHER EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTIC 1 182 - -
Chy06g00543 192 SUPERFAMILY Chlorophyll a-b binding protein 81 188 - -
Chy06g00543 192 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 1 182 - -
Chy06g00543 192 MobiDBLite consensus disorder prediction 52 79 - -
Chy06g00543 192 Pfam Chlorophyll A-B binding protein 94 135 IPR022796 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00543 - - - csv:101222770 329.331
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g559 . . . . . . . . . . Cma06g01369 Cma14g01747 Car06g01185 Car14g01576 Sed02g1344 Cpe08g00286 Cpe03g01467 Bhi01g00758 Tan10g0788 Cmetu06g0548 . Hepe05g1588 . Lcy11g1584 . . . . . . . . . Cone7ag0281 . Lsi05g01639 . . Cme06g00573 . . . . . . . . . Cmo06g01382 Cmo14g01784 . . . . . . . . . . . . . Cla05g00507 Cam05g0558 Cec05g0570 Cco05g0568 Clacu05g0555 Cmu05g0526 Cre05g0595 . Csa03g01289 Chy06g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010725 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00543 Chy_Chr06 FPKM 12.251593 12.697795 10.586571 11.140567 3.905192 3.669173 4.327059 6.110424 6.572991 5.905531