Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00552 ATGAAAACCTCAACCTCCCTTCTCCCAAGTGCTCTCCTCCTCATCTCCATCTTCACCCTCCTCTTCCAACCTTCCCATCAACAAACTCCGTCGCCACCACCGCCATTTCTCCCGAACCCCAGACTTCTTAAGGCCTACACCGCTCTCCAAGCTTGGAAACATGCCATCACTGAAGACCCAGCTAACTTCACTGCCAATTGGTACGGCCCCGACGTCTGCAACTACTCCGGCGTTTTCTGCGCCCCCGCCCTCGACGACCCCGACATCCGCACTGTCGCTGGGATCGACCTCAACCATGGCAACATCTCGGGCACCCTGCCCGATGACCTCGGCCTCCTGACCGACCTTGCTCTGTTCCATATCAACTCCAATCGATTCTGCGGCACCATCCCCAATTCCTTCCGGTGCCTCACTCTACTCTTCGAACTCGATATCAGCAACAATGACTTCTCCGGCGAATTTCCCTCTGTAATTCTCTCTCTCCCAGCTCTCAAATTCCTCGACATTCGATTCAACAAATTCAGCGGCGATGTCCCTTCTTCTCTTTTTGAATTGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAATTTTTCCTTACCGGAAAACATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAATATCAATGGCTGCCTCCCCTCTAGTATATCAAATATGAGCACCACACTCAATGAAATTATAATCACGGGCAGTGGGTTGATTGGGTGTTTGCCGTCGGAAATAGGGTCGTTGAGCAATCTCACTGTCTTCGACGTCAGTGATAATAATCTCGTCGGACCGTTACCGGAGACAATGGCTGGAATGAAGAAATTGGAGCAGCTAAATGTGGCACATAACCAATTATCCGGCGAAATTCCAGCGAGTATTTGCTCGCTGCCGAAATTGCAAAACTTCACATACTCGTATAATTTCTTCTGCAGTGATCCGCCGATTTGCTTGAAACTTCAGGCAAGTGATGACCAGAAAAATTGTTTGCCGGATAGGCCATTCCAACGTTCGCCGGAGGAATGCAAAGCTTTCTACTCTAACCCTGTTGATTGCGGCGTCTTTGGATGTACCCTTCGGCCACCACCACCGCCGCCGCCACCTTATTAG 1131 49.78 MKTSTSLLPSALLLISIFTLLFQPSHQQTPSPPPPFLPNPRLLKAYTALQAWKHAITEDPANFTANWYGPDVCNYSGVFCAPALDDPDIRTVAGIDLNHGNISGTLPDDLGLLTDLALFHINSNRFCGTIPNSFRCLTLLFELDISNNDFSGEFPSVILSLPALKFLDIRFNKFSGDVPSSLFELKLDALFINNNDFNFSLPENIGNSPVSVLVFANNNINGCLPSSISNMSTTLNEIIITGSGLIGCLPSEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSDPPICLKLQASDDQKNCLPDRPFQRSPEECKAFYSNPVDCGVFGCTLRPPPPPPPPY* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3765008 3766138 + Chy6G110800.1 Chy06g00552 228261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00552 376 Pfam Leucine rich repeat 235 293 IPR001611 GO:0005515
Chy06g00552 376 Pfam Leucine rich repeat N-terminal domain 47 80 IPR013210 -
Chy06g00552 376 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 15 372 - -
Chy06g00552 376 Gene3D Ribonuclease Inhibitor 208 334 IPR032675 -
Chy06g00552 376 Gene3D Ribonuclease Inhibitor 44 207 IPR032675 -
Chy06g00552 376 SUPERFAMILY L domain-like 45 326 - -
Chy06g00552 376 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 15 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00315 Chy-Chr1:2257222 Chy06g00552 Chy-Chr6:3765008 7.70E-122 dispersed
Chy05g01360 Chy-Chr5:17717964 Chy06g00552 Chy-Chr6:3765008 3.82E-153 dispersed
Chy05g01415 Chy-Chr5:18124565 Chy06g00552 Chy-Chr6:3765008 8.70E-92 dispersed
Chy06g00552 Chy-Chr6:3765008 Chy11g01657 Chy-Chr11:23038201 3.27E-124 dispersed
Chy06g00552 Chy-Chr6:3765008 Chy02g01174 Chy-Chr2:8415487 4.54E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00552 - - csv:101218509 705.286