Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00554 ATGATTGGGATCAAGCAAGCTGTTTCAGCCGTTCTGGAGGCTTTTGGTCCCCTGGGGGTGAGTTCAAATCGTGATAGTCTGGCCTGGATCCGTTACCTCGACTATTACTGGTGCAAGGACCAGGCTTTTCCAAGGTCTAAACATTTTGTTTGGTTGTTGTTTGCCGGAGTCATGGCAACCTTAATGCATTCTGAATCTCGGCGCTTATATTCTTGGTGGTGGGATAGCCATATCAGCCCCAAAAATTCAAAATGGCTACAGGAGAATCTAACAGACATGGATGCCAAAGTAAAAGCAATGATCAAACTCATTGAAGAGGATGCAGACTCCTTTGCCAGAAGAGCAGAAATGTACTATAAGAAACGTCCAGAGCTTATGAAATTAGTTGAGGAATTCTACCGAGCCTACCGTGCTTTAGCTGAAAGATATGACCATGCAACCGTGGAACTTCGCCATGCACATAAAGCCATGGCTCAAGCCTTTGACAACCAAATGCCTCCTTTTATGTTTTCCGACGAGTCTTCTGTTTCAGAAGCTGAATCCCACACGCCAGAGATCTACCTCCCAAACCATGCACTGCATGTCAAAGATGACTTGCACAAGGAATCGGGGAGTTCTTCGTCAACAAACCAACATCCATTGAGAATGAAAGGAGATGGTGCTGGGGAATCTAATTCTTGCATAAGTAAAGGAGGTCTGAAACAGCTCAATGAGATGTTTGCATCAAGAAAAAATGGGCCAGAAACTTTAGAGGTTAGTGAGGGAAGCATTGGAACGCAATCAGTTTTTCATGAAAGCGAATCTGATCCTTCTCAATTATCAAGGCAAATTAATGATCACGACTCTCAGGTCCTGTGTGAGTCAGTCTCAGAAAGTGATGAAAAATTGGATGCTGAACTTCAAAATTTAAGAAAAAGACTGAATCAGATGGAAGCTGAAAAGGAAGCTTTCTTTCTCAAATACCAGAATTCTCTGGAGAAGTTATCCAGCTTGGAGAAAGAACTTAGTTCTGCTCAAAAAGATGCTGGTGGACTTGACGAAAGAGCAAGCAAAGCTGAAATTGAAATAAAAATATTGAAGGAAGCCCTTCTAGATTTGAAAGCAGAGAAGAATTCTGGCCTTCTACAATATAATCAATGTTTGCAAAAGATATCTAGCTTAGAAAAGCTATTAGCTGTAGCCCAACAAGACGCTGAAGGACAAAATGAGAGAGCTGCTAAGGCAGAAATTGAAGCTCAGAACCTTGAGCAACAACTTTCCAGATTAGCATCTGAAAAGGAGGTCAGTCTTCTTCAGTATGAGCAATGCCTAAAGAAGATATCTGCTTTAGAGAACAAAATATCTCTTTCTGAAGATTATGCAAGGATGCTTGATGAACAAATGAATATTTCAGAAGCTGAAGTGAAAGCACTGAAGAGATCTCTTGATGAACTCAACGAAGAGAAGGAAATCGCATCTCGCAGTTATGAGCAGTGCTTGGAAAAAATTGCCAAGATGGAAACTGAAATATCTTATGCTCAAGATGATGCCAAACGTCTGAAAGGCGAACTCGTGATGACTAATGCAAAATTGGAGACAACTGAAGAAAGGTGTGCTCATTTGGAGAAGTCGAACCATTCGCTGCAGTTTGAGGCAGACAAACTTGTACAGAAAATTGCCATTAAGGATCAGGAGCTTGCTGAAAAGCAAGATGAGTTGAAAAAATTGCATAATTTAATGAATGAGGAGCAGTCACGATTTGTACAAGTTGAGAAAACTCTTCACACTCTGCAGAAGTTACATTGTCAATCTCAGGAGGAGCAGAGAGCTCTGACCTTGGAGCTTAAAAATGGTCTCATGATGCTGAAGGATTTGGATATATGCAAACATGGCATGGAGGAAGAGCTTCAACGAGTTAAGGATGAAAACAAAATGTTGAATGAATTGCATTTTTCTTCCAATACTTCAATGAAGAATTTAGAGGATCAGTTATCTGGCTTGAAGGAGATAAAAGAGAAGCTTGAAGAGGTGGTTTCCCAAAAAGAAGAGCAGAGCAACTTGCTTGAGAAAGAGATCTATCATTTGAGAGAAGAAATTAAAGGCTTGAGTGGAAGATACCAGGGCATAATGAGACAATTGGAGGCAGTAGGATTGGATCCGCACTCCCTTGAATCCTCTGTGAAGGAATTTCAAGAGGAAAATGCCAAGCTGAGGGAGGCCTGTGAAAAGGACAGGAACAAGATCGAAGCACTTTATGAAAAACTCAGTTATATGGATGAACTTGCAAAGGAAAATTCGAATCTCAAGGTATCTCTGGCTGAATTGAATGCTGAACTGGAGAAGATAAGGGAGAAAGTCAAGGAATCCCAGGAGGTTTCCCAATTTACCCAGGGAGAAAAGACTGCTCTTGTTGCAGAGAAATCTTCCTTGCTTTCACAACTGCAGAATGTAACTGAGAATATGATGAAACTTTTAGAGAAGAACACATTGCTGGAAGACTCCCTATCTAGTGCAAATAAAGAGCTTGAAGGATTAAGGGCAAAATCAAAGGGCTTAGAAGAATTTTGCCAGTTGCTGAAGGATGAGAGATCCAATCTCTTGAATGAAAGAGGTGCACTGGTGGCTCAGCTTGAAAACATTGAACTGAGACTTGGAAACTTGGAAAAGAGGTTTACGAATCTAGAAGAAAAATATGCTGATCTGGAAAATGACAAAGATTCTGCCTTACATCAAGTGGAAGAATTGAGATTTTCCCTTCTCATAGAAGAACAAGAGCATACAAGTTACAAGCAGTCGACTGAGGCCAGACTTACTGGTTTGGAGAACAATGTCCATAAACTACGAGAAGAAAGTAGAGTGAGCAAGGAAGAAATTGAAGAGCTACTAGACAAGGCTGTGAATGCCCAAGTTGAAATCTACATATTGCAGAAGTTTGTTGAGGATTTGGAAGAGAAAAATCTTTCTTTGCTTATTGAATGCGAACAATATGAGGAGGCATCCAAGTTATCAGATAAACTTATTGCTGAACTGGAAGGTGAAAATCTTGAGCAACAAGTTGAAGTAGAATTTATGTACAATGAAATTGATAAATTAAGAGCAGGAATCCGTAAGGTATTAATGGCACTTCAAATGGATCAAGATTGTGGGCAGGGAAATGTGAAAGAAGAGAGAATTATGATAGTGGATATTTTGGCCAGAATTGAGGATTTGAAAGCTTCTGTGTTCAAAAACAAGGACAAGAAGCAGCAACTGTTAGTTCAGAACTCAGTTTTATTAACTCTTCTCAAGCAACTGAGTTTAGAGAGTGAAGAACTTCTGTCAGAGAAAGAGAACATTGTGCAGGAGTTAAAGATCATGAAGGGCCAACTAGCAATGCATGAAAATGACAAGCATGAGCTTCTGAAGATTAAAAACCAGTTGATGATGCAAGTTAGCCAGTGGGAACAGCATGAGCTACTGCTGAAGGCTGAGATTGAAACTCTAAATGAGAAGCTAATAAATCTGCAAGGGGCCTGTCTTATGCTGGAAAAGGAAAATTTTAATGTTGCTGAAGAAAAAAAAACGTTGCTGAAGAAATTTCTGGACCTTGAAGAGGACAAGAATATTATTCAACAAGAGCAGCACAATTTAATCATCCAGGAAGTGATTGCTTTCAACATTCTATCATCAATTTTTGAAAGCTTCAAAACCGAGAAATTCTTGGAAATAGAAAAGCTCGTTAAAGATATATGTCATCTCCAAGTGGTTAATTCTGATTCAAGGGAAGAATTTGGGAAGTTGGCAGATAAATTTCAGTTGAAGGAAGTGGAAAATTTTCATTTAAATGGATCTGTAGAGAAATTGTCCAAGGAGCTACATGAAGCAGAAGACTTGAACGATGAACTTAACTATCAAATTTTACTTGGAAATGATTTTCTGAGGCTAAAGGCCCAAGAGCTTTCTGAAACAGAAGCAGAGCTTAAAAATTCTCAAAATTTCAACATGAAGTTGTCTGGGACAGTTGAGGAGCTCAAGATGGAAGGTAAGGAATCGATGAAGATCAGACACAGCCTACAGAGTGAGAATTTTCAACTTTCTGAAACGTGCTTAAGCCAGGAGAATGATATTCAAAGCCTCTGTGAAGTAAATAAAAATTTAAAATCTGAAGTTGATTTGTTGAATGAGGAGGTTGGGAAATGCAAAATTCGAGAGGAGTGTTTGAGTTTAGAACTACAGGAAAGAAGAGATGAATTTGAGCTCTGGGAAGCTGAAGCCACAACATTTTATTTTGATCTTCAAATCTCATCGATACGGGAGGTTTTGTACGAACATAAGGTTCATGAACTTGCACAGGCTTGTGAAAATGCTGGGGATGAGAACGCTGCAAAAACTATGGAGATTGAACAACTCAGAGAAAGAGTGAGTTTCCTAGAAACTGAAATCAGAGAAATGGAGTCACAGTTGTCTGCATATAAGCCCGCCATAGCTTCTTTGAGGGAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAGACTAGGGATACCTGTAGAGGTTTTATAGGAGAAGAGGGCAAGGAAACCACAATTCATGTTGATCACAGGATCTGTAATGGCCACAAAGATGAGATATTGGATTTACAGAAGATTGGGGCCATGATAAAAGCAGTTGAGAAGGCTGTGATCAAGGAAAAGGAAAAACTCAGCAAAGAAGCTACTGACAAACATGTCAAAGACTTCAAATCAGAAGGAGCCTCCCGTCAGAAAGTGACGATGAAGGAAAAGAAAGATTTGGTAGATGGAATTACTAGTAATCTGAAGACAAGAAAGAAGAAACCTGACAATGGAATATTAATGAAAGATATTCCATTGGATCATGTATCAGATAGTTCTTTCCAGAGAAGAAGCAAAAGGGAAAGTAGTGAGGCCAATGATCAAATGCTTAAGTTGTGGGAAACTGATGAGCAGGATTGTGACCAGAATTTGGTTGATAGCTCGCCACCACAAAGCCCACCTGATCCACAAATCGAGTACCCGCATTTGGAAATTGTAGAGCATAAGAGTCCAGATTTTTCTTCAGATCTGCAAGCAGAGAAGGAGTTGAGCATTGATAGATTAGAACTATCGCCCAGCATTAGAGAACGAATTCGAAGAGGTCGAAAAGGAAAGATTTTAGAGAGGCTTGATTCAGATGTCGTTCAATTGACAGGTCTTCTAACAAGCGTTCAAGATCTGAAAAAGAGAATTGAAGTGAACACCCTTGAAATGGCCAGAAACAACGAATATGACACGGTCGAAAAACATATAAAAGAAGTCGAGGAAGCCATTTATCAGCAAGTAAATATGAATGGTCAACTGAAGCAGAATTTAGAACGCAGTCCTTCATCCTTTGAGCGAAGACCATCAGTCGAGCTCGAAGCAACGGGAAACATCCCCCTAAGTAAACTAACAGAGCAGGCACAAAGAGGATCCGAGAAGATAGGAAAACTACAGTTTGAGGTACAGAACATTCAGCGTGTTGTGCTGAAACTTGAAGCCGAGAAGAAAAGAAAAGGGAAGAACAAATTCTCCAAGAGTAAACCTAGTGTTATTCTGAGAGACTTCATCTGCAGAAGCGGAAAACGAAGTGAAAGACGAAAGAAGCCGTGCTCTTGTGGATGCACAAGACCTACTACTCATGGAGACTGA 5646 39.94 MIGIKQAVSAVLEAFGPLGVSSNRDSLAWIRYLDYYWCKDQAFPRSKHFVWLLFAGVMATLMHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATVELRHAHKAMAQAFDNQMPPFMFSDESSVSEAESHTPEIYLPNHALHVKDDLHKESGSSSSTNQHPLRMKGDGAGESNSCISKGGLKQLNEMFASRKNGPETLEVSEGSIGTQSVFHESESDPSQLSRQINDHDSQVLCESVSESDEKLDAELQNLRKRLNQMEAEKEAFFLKYQNSLEKLSSLEKELSSAQKDAGGLDERASKAEIEIKILKEALLDLKAEKNSGLLQYNQCLQKISSLEKLLAVAQQDAEGQNERAAKAEIEAQNLEQQLSRLASEKEVSLLQYEQCLKKISALENKISLSEDYARMLDEQMNISEAEVKALKRSLDELNEEKEIASRSYEQCLEKIAKMETEISYAQDDAKRLKGELVMTNAKLETTEERCAHLEKSNHSLQFEADKLVQKIAIKDQELAEKQDELKKLHNLMNEEQSRFVQVEKTLHTLQKLHCQSQEEQRALTLELKNGLMMLKDLDICKHGMEEELQRVKDENKMLNELHFSSNTSMKNLEDQLSGLKEIKEKLEEVVSQKEEQSNLLEKEIYHLREEIKGLSGRYQGIMRQLEAVGLDPHSLESSVKEFQEENAKLREACEKDRNKIEALYEKLSYMDELAKENSNLKVSLAELNAELEKIREKVKESQEVSQFTQGEKTALVAEKSSLLSQLQNVTENMMKLLEKNTLLEDSLSSANKELEGLRAKSKGLEEFCQLLKDERSNLLNERGALVAQLENIELRLGNLEKRFTNLEEKYADLENDKDSALHQVEELRFSLLIEEQEHTSYKQSTEARLTGLENNVHKLREESRVSKEEIEELLDKAVNAQVEIYILQKFVEDLEEKNLSLLIECEQYEEASKLSDKLIAELEGENLEQQVEVEFMYNEIDKLRAGIRKVLMALQMDQDCGQGNVKEERIMIVDILARIEDLKASVFKNKDKKQQLLVQNSVLLTLLKQLSLESEELLSEKENIVQELKIMKGQLAMHENDKHELLKIKNQLMMQVSQWEQHELLLKAEIETLNEKLINLQGACLMLEKENFNVAEEKKTLLKKFLDLEEDKNIIQQEQHNLIIQEVIAFNILSSIFESFKTEKFLEIEKLVKDICHLQVVNSDSREEFGKLADKFQLKEVENFHLNGSVEKLSKELHEAEDLNDELNYQILLGNDFLRLKAQELSETEAELKNSQNFNMKLSGTVEELKMEGKESMKIRHSLQSENFQLSETCLSQENDIQSLCEVNKNLKSEVDLLNEEVGKCKIREECLSLELQERRDEFELWEAEATTFYFDLQISSIREVLYEHKVHELAQACENAGDENAAKTMEIEQLRERVSFLETEIREMESQLSAYKPAIASLREDVESLKHIVLPQTRDTCRGFIGEEGKETTIHVDHRICNGHKDEILDLQKIGAMIKAVEKAVIKEKEKLSKEATDKHVKDFKSEGASRQKVTMKEKKDLVDGITSNLKTRKKKPDNGILMKDIPLDHVSDSSFQRRSKRESSEANDQMLKLWETDEQDCDQNLVDSSPPQSPPDPQIEYPHLEIVEHKSPDFSSDLQAEKELSIDRLELSPSIRERIRRGRKGKILERLDSDVVQLTGLLTSVQDLKKRIEVNTLEMARNNEYDTVEKHIKEVEEAIYQQVNMNGQLKQNLERSPSSFERRPSVELEATGNIPLSKLTEQAQRGSEKIGKLQFEVQNIQRVVLKLEAEKKRKGKNKFSKSKPSVILRDFICRSGKRSERRKKPCSCGCTRPTTHGD* 1882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3771421 3778896 - Chy6G110820.1 Chy06g00554 228263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00554 1881 Coils Coil 720 747 - -
Chy06g00554 1881 Coils Coil 1296 1316 - -
Chy06g00554 1881 Coils Coil 863 911 - -
Chy06g00554 1881 Coils Coil 751 785 - -
Chy06g00554 1881 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 70 150 IPR011684 GO:0003779
Chy06g00554 1881 PANTHER PROTEIN NETWORKED 4A 58 1881 - -
Chy06g00554 1881 Coils Coil 1000 1020 - -
Chy06g00554 1881 Coils Coil 377 432 - -
Chy06g00554 1881 Coils Coil 1362 1389 - -
Chy06g00554 1881 Coils Coil 923 957 - -
Chy06g00554 1881 SUPERFAMILY Tropomyosin 286 497 - -
Chy06g00554 1881 Coils Coil 454 579 - -
Chy06g00554 1881 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 58 1881 - -
Chy06g00554 1881 Coils Coil 1439 1473 - -
Chy06g00554 1881 Coils Coil 1151 1171 - -
Chy06g00554 1881 Coils Coil 615 642 - -
Chy06g00554 1881 MobiDBLite consensus disorder prediction 200 225 - -
Chy06g00554 1881 Gene3D - 607 757 - -
Chy06g00554 1881 Coils Coil 1088 1122 - -
Chy06g00554 1881 Coils Coil 650 691 - -
Chy06g00554 1881 Coils Coil 972 992 - -
Chy06g00554 1881 Coils Coil 800 841 - -
Chy06g00554 1881 Coils Coil 286 369 - -
Chy06g00554 1881 Pfam KIP1-like protein 71 144 IPR011684 GO:0003779
Chy06g00554 1881 Coils Coil 1271 1291 - -
Chy06g00554 1881 MobiDBLite consensus disorder prediction 1558 1582 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00554 - - - csv:101218746 3326.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00402 Chy-Chr5:4303411 Chy06g00554 Chy-Chr6:3771421 1.67E-48 dispersed
Chy06g00554 Chy-Chr6:3771421 Chy06g01599 Chy-Chr6:18405564 2.60E-25 dispersed
Chy09g00118 Chy-Chr9:968157 Chy06g00554 Chy-Chr6:3771421 1.28E-08 transposed
Chy12g01573 Chy-Chr12:19268024 Chy06g00554 Chy-Chr6:3771421 1.04E-11 transposed
Chy01g01555 Chy-Chr1:21477802 Chy06g00554 Chy-Chr6:3771421 2.70E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00554 Chy_Chr06 FPKM 5.189846 4.718867 7.081992 6.938597 5.028647 4.974962 4.613972 5.903486 6.055453 6.15303