Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00556 ATGGATTCGAAAGGAAATGTTATGGGGGGTGCTGCGATCCCAAAGGAGACACAGAACCAGGATAGACCTCCGAACTCAAAGGTGGCTGGTATGGGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGACATGATTGATTTGAAAACTCTAGATATACAGCTAGAGAAGCACTTGAGCCGTGTTTGGTCAAAGAGCATTGATAATCAAATGCCTAAGGAACCGTGGGAGATTGATTTGTCTAAACTTGATATGATTAAACAAATTGCTCAAGGGACTTACGGAACAGTATACAGGGGTAAATATGACAACCAAGAGGTTGCAGTTAAGATATTGGACTGGGGAGAGGAGGGTCTAGCCACGATGGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAATTTATCGGAGCTTCAATGGGAGCTACAAATCTTAAAATTCCAATGGATGGTCAAAATTCGTTTCCATCTAGGGCCTGTTGTGTTGTTGTTGAGTACGTTCCTAGCGGGACATTAAAAGATCATTTGATTAGATACTGGACAAAGAAACTTGCCATTAAGGCTGTAGTTAAATTAGCTTTGGATCTCTCTAGAGGGCTTAGCTATTTACACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGATGGATATTAACGATAATGTCAAAATTGCTGATTTTGGGGTTGCCCGCGTTGAAGCTCAGAATCCAAGAGATATGACTGGGGCAACTGGTACCCTAGGATACATGGCCCCGGAGGTTCTTCAAGGGAAGCCGTACAATAGAAGTTGTGATGTCTATAGCTTTGGGATCTGCTTGTGGGAAATTTACTGCTGTGATATGCCATATGCCGATCTTAGTTTCGCTGATGTGTCATCTGCAGTTGTGAGACATAATCTGCGGCCTAGTATCCCGAGATGTTGTCCAAGCTCTCTAGCAAATGTGATGAAGAAATGCTGGGATGCCAACCCAGAGAAACGCCCTGAAATGCACGAGGTTGTCAGAATGTTGGAGGCCATTGATACAAGCAAAGGAGGAGGGATGATTAATCCCGATGACATTAAATGCTTCTGTCTAGGGCCTTTCGGCAAGCTCCGAGGTCTGTGA 1164 43.73 MDSKGNVMGGAAIPKETQNQDRPPNSKVAGMGSISSKDMIFRADMIDLKTLDIQLEKHLSRVWSKSIDNQMPKEPWEIDLSKLDMIKQIAQGTYGTVYRGKYDNQEVAVKILDWGEEGLATMAETAALRASFRQEVAVWHKLDHPNVTKFIGASMGATNLKIPMDGQNSFPSRACCVVVEYVPSGTLKDHLIRYWTKKLAIKAVVKLALDLSRGLSYLHSKKIVHRDVKTENMLMDINDNVKIADFGVARVEAQNPRDMTGATGTLGYMAPEVLQGKPYNRSCDVYSFGICLWEIYCCDMPYADLSFADVSSAVVRHNLRPSIPRCCPSSLANVMKKCWDANPEKRPEMHEVVRMLEAIDTSKGGGMINPDDIKCFCLGPFGKLRGL* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3814007 3816464 + Chy6G110840.1 Chy06g00556 228265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00556 387 Gene3D Transferase(Phosphotransferase) domain 1 182 368 - -
Chy06g00556 387 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 1 373 - -
Chy06g00556 387 MobiDBLite consensus disorder prediction 1 30 - -
Chy06g00556 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Chy06g00556 387 PRINTS Tyrosine kinase catalytic domain signature 217 235 IPR001245 GO:0004672|GO:0006468
Chy06g00556 387 PRINTS Tyrosine kinase catalytic domain signature 327 349 IPR001245 GO:0004672|GO:0006468
Chy06g00556 387 PRINTS Tyrosine kinase catalytic domain signature 179 192 IPR001245 GO:0004672|GO:0006468
Chy06g00556 387 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Chy06g00556 387 ProSiteProfiles Protein kinase domain profile. 83 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00556 387 Pfam Protein tyrosine and serine/threonine kinase 84 356 IPR001245 GO:0004672|GO:0006468
Chy06g00556 387 CDD STKc_MAP3K-like 89 356 - -
Chy06g00556 387 Gene3D Phosphorylase Kinase; domain 1 71 165 - -
Chy06g00556 387 SMART serkin_6 83 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00556 387 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 373 - -
Chy06g00556 387 SUPERFAMILY Protein kinase-like (PK-like) 63 356 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02571 Chy-Chr2:28921622 Chy06g00556 Chy-Chr6:3814007 4.54E-172 dispersed
Chy04g01464 Chy-Chr4:21251658 Chy06g00556 Chy-Chr6:3814007 8.24E-175 dispersed
Chy06g00556 Chy-Chr6:3814007 Chy05g00823 Chy-Chr5:11816512 2.10E-74 dispersed
Chy01g01553 Chy-Chr1:21437707 Chy06g00556 Chy-Chr6:3814007 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71316 PF07714 PK_Tyr_Ser-Thr 2.30E-61 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00556 - - csv:101218975 787.334