Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00559 ATGCAATTCTGCCGCTTGCTTTTCTCTCCGGGGGGTTTCTCTGCTCTTCCCGGTTTTGTGGGGGCACTAAACCGAGATTTCCAGTTGAGGTTCGGACCTTCTTGTTGTAGGTTGTACAGCATCTCCCGCAGTAATTTCGACTTCACAGACTTGACATGTCCCCATTCATGGTATCCAAATGCACGAAAGAAACATCGCAAAATTTTTCTGCACATGGGTCCAACAAATAGTGGCAAAACTCACAATGCTTTGAAGAGGCTTGAATCAAGTGATTCTGGTGTATATTGTGGTCCCCTGAGATTATTGGCCTGGGAAGTCGCAAAGCGATTGAATAAGGCTAAAATTCCCTGCGATCTGATCACAGGACAAGAGAGAGAGAAAGTTGATGGTGCAAAACATAAGGCTGTGACGGTTGAAATGGCCGATGTAACTTCCAGCTACAGTTGTGCTGTTATCGACGAAATTCAGATGTTGGGCTGTAAGACGAGAGGTTATTCTTTTACACGTGCCCTACTTGGACTCTGTGCTGATGAGATTCATCTTTGTGGGGATGCAGCTGTTGTACCCCTTATTCAGGAAATTCTCAAAGTAACTGGTGATGACATTGAGGTGCAATACTATGAGAGACTTTCACCTCTGATTCCATTGAACATTCCACTTGGATCCTATTCTAATATTAGGAAGGGTGATTGCATTGTCACCTTTTCACGTCGTAGAATATATGGTTATAAGAAAGAAATAGAAAGACAAGGTGGACATCTTTGCTCTATAGTTTATGGCTCACTACCACCAGAAACTCGAACAAGGCAGGCAATGATGTTCAATGATACAACGAGCGAGTTTGATGTGCTGGTGGCTAGCGATGCCATTGGGATGGGTCTTAATTTGAACATCTCGAGGATCATATTTTCAACTATGGAGAAATTTGATGGTTTTGAGATGCGGGAGCTTACTGTACCAGAGATCAAACAGATTGCAGGTAGAGCTGGCAGGTTTGGATCCAAATTTCCCATTGGTGAAGTAACTTGTATAAGTGGAGATGATTTACCCTTACTTCATTCATCACTTAAGTCCGCTTCTCCCACTATAGAGAGAGCTGGGCTATTTCCAACTTTTGAACTCATGTATTTATACTCCCGTTTGCATCCTGAACATGGCCTGCGGCAGATACTGGAGCACTTTGTTGAGAATGCTAAATTGTCCGAAAATTATTTCATCGTTGACTGTGAAGTAATGTTGAAAGTTGCTGCTGTCCTTGATGAGATGCCTCTCAGTTTGCATGATAAGTACCTTTTCTGTATCAGCCCTGCGGACATGGATGACGAAATTACCTCCCAAGGTCTTACACAGTTTGCTCAAAGTTATGCAAATAAAGGCATTGTTCGACTACGAGAAATATTCAAAGAAGGAACACTTAAAGTGCCAGAAACACCAGCTGCGCTGAAGGAACTGGAATCCATTCACAAGGTGTTGGATCTCTATGTTTGGTTGAGTTTCCGACTGGAGGAATCATTCCCTGACCGTGAACGGGCAGATTCACAGAAGTCATTCTGCAGCATAAAAATAGAATCCAACTTAACCTTATATTTTAGTGATTGGGTTGGGTTGAAAATGGTTGTAAATCCAATTGAGAATATCTCAAATCCAACCGTTTACGCCCCTACTATCTCCGATCTCCCCTCGCGCAAAACTCAAACTTTGTGTCTCAAAATTCGAACTTGTTGA 1725 42.67 MQFCRLLFSPGGFSALPGFVGALNRDFQLRFGPSCCRLYSISRSNFDFTDLTCPHSWYPNARKKHRKIFLHMGPTNSGKTHNALKRLESSDSGVYCGPLRLLAWEVAKRLNKAKIPCDLITGQEREKVDGAKHKAVTVEMADVTSSYSCAVIDEIQMLGCKTRGYSFTRALLGLCADEIHLCGDAAVVPLIQEILKVTGDDIEVQYYERLSPLIPLNIPLGSYSNIRKGDCIVTFSRRRIYGYKKEIERQGGHLCSIVYGSLPPETRTRQAMMFNDTTSEFDVLVASDAIGMGLNLNISRIIFSTMEKFDGFEMRELTVPEIKQIAGRAGRFGSKFPIGEVTCISGDDLPLLHSSLKSASPTIERAGLFPTFELMYLYSRLHPEHGLRQILEHFVENAKLSENYFIVDCEVMLKVAAVLDEMPLSLHDKYLFCISPADMDDEITSQGLTQFAQSYANKGIVRLREIFKEGTLKVPETPAALKELESIHKVLDLYVWLSFRLEESFPDRERADSQKSFCSIKIESNLTLYFSDWVGLKMVVNPIENISNPTVYAPTISDLPSRKTQTLCLKIRTC* 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3821765 3830400 - Chy6G110870.1 Chy06g00559 228268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00559 574 CDD SF2_C_suv3 211 343 - -
Chy06g00559 574 Gene3D - 209 360 IPR027417 -
Chy06g00559 574 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 43 526 - -
Chy06g00559 574 Pfam Suv3 C-terminal domain 1 415 456 IPR041082 -
Chy06g00559 574 Gene3D - 48 433 - -
Chy06g00559 574 CDD DEXQc_Suv3 66 207 IPR044774 GO:0003724|GO:0005524
Chy06g00559 574 Gene3D - 435 531 - -
Chy06g00559 574 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 202 376 IPR001650 -
Chy06g00559 574 SMART helicmild6 245 333 IPR001650 -
Chy06g00559 574 Pfam Mitochondrial degradasome RNA helicase subunit C terminal 481 526 IPR022192 GO:0016817
Chy06g00559 574 Gene3D - 54 208 IPR027417 -
Chy06g00559 574 Pfam Helicase conserved C-terminal domain 230 333 IPR001650 -
Chy06g00559 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 335 IPR027417 -
Chy06g00559 574 PANTHER ATP-DEPENDENT RNA HELICASE SUPV3L1, MITOCHONDRIAL 43 526 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00559 K17675 SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:3.6.4.13] - csv:101204337 1041.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00559 Chy-Chr6:3821765 Chy11g01649 Chy-Chr11:22983972 8.16E-135 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g532 . . . . . Bpe14g01202 . . . . . Cma14g01728 . Car14g01559 . . Cpe03g01451 Bhi01g00784 . . . Hepe05g1572 . Lcy11g1567 . . . . . . . Cone14ag0866 . . . Lsi05g01623 . . Cme06g00591 Blo02g00530 . . Bda13g00108 . . Bma02g00831 . . . Cmo14g01767 . . . . . . . . . . . . . Cla05g00523 Cam05g0576 Cec05g0586 Cco05g0584 Clacu05g0572 Cmu05g0542 Cre05g0611 . Csa03g01305 Chy06g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008560 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00559 Chy_Chr06 FPKM 25.138842 28.244453 26.010603 27.643044 23.858664 21.961786 25.737312 25.016914 24.188114 25.415316