Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00577 ATGGAGCCAATTGATGGATTAACCTCAACCAATTACAAGGCGGGATCTGTCTCCAACCTCCAAATGGCCATTTCATCAGTGTTTTCACGGTGGGACGGCCTTCAAATGGCCATTGAAAATCAATGGGGAGGTCGCGACTCTCACCAAAAATCACTGAATCTCGTCTCTGATGTCTTCTCTTGGTTCTCTCATTCCAAACCTCCTTTATACGTGGAAGATCTGGAAAATTTGCTCCATGAAACTCTATTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAACAATTGATGATGATATACGAAGAAAATTTGGTGGGAAGTCCTAAGTTCAAGTTGAAGAATGTGACAAGTTTTCCTAAGATTATCACACCACACTACTGGACAGACCAAACCCTAGAGTTCTCTGGATGCCTTGTTGAATTCTTCGAGATGTCGAGGAATCCCGTGAAGACAGAAGTTCTTGAGGATACAAATGGCTGTTCATCCGGGGCGAATAAAAATGAGCTGATGCTTAGGCCAGTTTCTCAAGATGAATCTGGGGAGGGCTTGCCATATGCTCCTGAAAATTGGCCCAATCCTGGTGATAACTGGAGTTGGAGGGTGGGGAAGAGAGTTGCTATAACTGGCCATTTTCTGGATAGGTACCTTTATTCTCCTCGTGGTATTAGCACGTCCGAAAACTCAGCTCGTAAAGGGCAAAGTTTTGCAAGCAAGCTTTCAGTTGAAAGATATATCCAGTCTGAGTTCCCTAATGCAGACGTTGAGGCTTTTTTTGCTTCATTCAGTTGGAAGATACCAGCAAAAAAGTCATCTTCAGCCCAAGGTATTCGAGTGAAGCACATTCCATGCCCTCTACCCTCAAAAAAGATAGACGAATGCTCCGCATCTGAGTCCCAGAATGATAGAGTGGGTTGCAAGGCTGGAAATAAGAACTGTTATAGTTTATCTGTTTCTGAAAATCCATCTTCATCCAAATCCATGTCTTGTGGTATTTGCTGCAGTGAACCTTGCTTTTGCCGTGATTGCTGCTGTATACTTTGCTGCAAGATTATAGACACGACCGTGGAAAGTTATAGCTACATAAAATGTAAAGAAGTGGTTGGTGATGGATATATTTGTGGACATCTTGCTCATATAAAATGTGGTCTTAAATCGTATACAGCTGGGACAGTTGGAGGAAGCATTGGACTGGATGCTGAGTATTATTGTCGACGTTGTGATGCCAGAACGGATTTGGTATCACATGTGGAAAGATTTTTGCAGTCATGCCAATCAGCTGACTGTCAAGATGATGTTGAGAAGATCTTAAACCTTGGTTTATGTATTTTGCGTGGTTCACACAAAATGAGAGCAAAGGAGTTGTTAAGACACATTGAACTGAGCATTGAGAAGATTAAAACTGGGACTTGCTTGGAAGAGATTTGGAAGATGGAGGAAGATAGCTCAGCAAATTGCACTGATGCACCTGATACTGCTGATTCTACAGAAAGTTCTCATGAAACTTCAGACTCCCTTATAAGCTCAGAATGGACTATGTCCACCCCTTTTGATCATTGGATCGAGTCCCTAAAACTTGAAGACGAAATTGATCAGGTTTTGCATGGACTGAAAAGATCACAGGAGTTCGAGTATAATTTAGCAGAAGAAAAGCTTCTATTACATAAAAATTATCTACATAATCTCTTTCAGCAACTTGAAAAGGAGCAAACTGAACTCAGACATCAAGCACCATCAACGGGACAAAATGCCGTATCAAACAGAGTGGACCAAATAAAACGAGAAGTAAAGAGACTGAAGAGAATGGAAAAGATTGCCGATGGATTTGGAATGACTCCGAAAGATATCCTCAAGGAGGACTTCGATTTGGACGTTGAAATAGAGATACGGAAGTGA 1911 41.92 MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSPKFKLKNVTSFPKIITPHYWTDQTLEFSGCLVEFFEMSRNPVKTEVLEDTNGCSSGANKNELMLRPVSQDESGEGLPYAPENWPNPGDNWSWRVGKRVAITGHFLDRYLYSPRGISTSENSARKGQSFASKLSVERYIQSEFPNADVEAFFASFSWKIPAKKSSSAQGIRVKHIPCPLPSKKIDECSASESQNDRVGCKAGNKNCYSLSVSENPSSSKSMSCGICCSEPCFCRDCCCILCCKIIDTTVESYSYIKCKEVVGDGYICGHLAHIKCGLKSYTAGTVGGSIGLDAEYYCRRCDARTDLVSHVERFLQSCQSADCQDDVEKILNLGLCILRGSHKMRAKELLRHIELSIEKIKTGTCLEEIWKMEEDSSANCTDAPDTADSTESSHETSDSLISSEWTMSTPFDHWIESLKLEDEIDQVLHGLKRSQEFEYNLAEEKLLLHKNYLHNLFQQLEKEQTELRHQAPSTGQNAVSNRVDQIKREVKRLKRMEKIADGFGMTPKDILKEDFDLDVEIEIRK* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3919901 3929826 - Chy6G111050.1 Chy06g00577 228286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00577 636 Pfam PHD - plant homeodomain finger protein 314 447 IPR032881 -
Chy06g00577 636 Coils Coil 587 607 - -
Chy06g00577 636 MobiDBLite consensus disorder prediction 488 513 - -
Chy06g00577 636 Pfam Pre-rRNA-processing protein TSR2 22 100 IPR019398 -
Chy06g00577 636 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 151 631 - -
Chy06g00577 636 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 151 631 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00577 - - - csv:101220879 934.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00240 Chy-Chr4:2162431 Chy06g00577 Chy-Chr6:3919901 1.04E-24 dispersed
Chy06g00577 Chy-Chr6:3919901 Chy01g01106 Chy-Chr1:12545939 1.06E-08 dispersed
Chy06g00577 Chy-Chr6:3919901 Chy01g00512 Chy-Chr1:3697520 5.52E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g513 . . . . . . . . . . . . Car06g01212 . Sed12g0930 . . Bhi01g00805 Tan10g0838 Cmetu06g0605 . . . Lcy11g1549 . . . . . . . . . . Cone4ag0247 Lsi05g01608 . . Cme06g00606 Blo02g00536 . . Bda13g00118 . . . . . Cmo06g01409 . . . . . . . . . . . . . . Cla05g00540 Cam05g0589 Cec05g0599 . . . . . Csa03g01326 Chy06g00577 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003503 1 5 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00577 Chy_Chr06 FPKM 14.664142 17.066818 15.604444 17.820257 14.245282 17.497524 11.601579 15.547685 20.236128 17.254011