Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00587 ATGGCTGATGTTTCCTCTGCTAATTTGGTTAACAATGGGAATGAGCTTATTGAGAAGGGTCATTCCTTAAATGGGTATCGAAAAAGCTGTTGGTATGAAGAAGAAATTGAAGAGAATTTAAGATGGTCCTTTGCTCTTAACAGTATACTACATACTGGAGCTTCTCAGTATCAAGATATCGCGTTACTCGACACAAAGCCATTCGGGAAGGCGTTGGTTATCGATGGAAAACTACAGAGTGCAGAAACTGATGAATTCATTTACCATGAATGCCTTGTTCACCCTGCCCTTCTCCATCATCCCAATCCAAAGTCCATTTTTATCATGGGAGGAGGTGAAGGCTCCACAGCAAGAGAACTCCTTAGACATAAGACTGTGGAGAAAGTCGTAATGTGCGACATCGATGAGGAAGTTGTTGATTTCTGCAAGTCATACCTGATAGTCAACAAAGAAGCTTTCTGTGATCCAAGACTTGAACTTATCATTAACGATGCCAGAGCGGAGCTTGAGAACCGAACTGAGCTATACGACGTAATTGTTGGTGATCTTGCAGACCCAATCGAGGGTGGTCCTTGTTATAAACTCTATACCAAATCTTTCTATGAATATACTGTGAAGCCTAGATTGAAGCAAGATGGCATATTTATTACTCAGGCTGGTCCAGCTGGAATTTTCAGCCATACTGAAGTGTTTTCTTGCATCTACAATACTCTAAAGCAAGTTTTTAAATATGTGGTGCCTTATTCTGCCCATATTCCTTCCTTTGCAGATACTTGGGGTTGGGTTATGGCCTCAGACACCCCTTTCAATCTGAATGCTGATGATTTGGACCAGAGAATCAAACAAAGAATCACAGGGGAAAACAAGTACTTTGATGGAAAAACTTTCTCATCTGCCTCTACATTAAGCAAAGCCGTTCGGAAGTCACTGGACAACGAGACGCAAGTGTACACGGAAGAAACGGCGAGGTTCATATATGGATATGGAGCTGAAGCCTGCAAGCTCAACCAAGTCTGA 1017 41.99 MADVSSANLVNNGNELIEKGHSLNGYRKSCWYEEEIEENLRWSFALNSILHTGASQYQDIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHHPNPKSIFIMGGGEGSTARELLRHKTVEKVVMCDIDEEVVDFCKSYLIVNKEAFCDPRLELIINDARAELENRTELYDVIVGDLADPIEGGPCYKLYTKSFYEYTVKPRLKQDGIFITQAGPAGIFSHTEVFSCIYNTLKQVFKYVVPYSAHIPSFADTWGWVMASDTPFNLNADDLDQRIKQRITGENKYFDGKTFSSASTLSKAVRKSLDNETQVYTEETARFIYGYGAEACKLNQV* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3995793 3998345 + Chy6G111150.1 Chy06g00587 228296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00587 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 29 311 IPR029063 -
Chy06g00587 338 Pfam Spermidine synthase tetramerisation domain 31 82 IPR035246 -
Chy06g00587 338 CDD AdoMet_MTases 110 218 - -
Chy06g00587 338 Gene3D Spermidine synthase, tetramerisation domain 29 81 IPR037163 -
Chy06g00587 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 29 266 IPR030374 -
Chy06g00587 338 Gene3D Vaccinia Virus protein VP39 82 333 IPR029063 -
Chy06g00587 338 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 1 331 - -
Chy06g00587 338 Hamap Polyamine aminopropyltransferase [speE]. 30 311 IPR001045 GO:0003824
Chy06g00587 338 Pfam Spermine/spermidine synthase domain 85 264 - -
Chy06g00587 338 PANTHER SPERMINE SYNTHASE 1 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00587 K18787 ACL5; thermospermine synthase [EC:2.5.1.79] - csv:101221818 693.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00658 Chy-Chr3:9185384 Chy06g00587 Chy-Chr6:3995793 4.93E-160 dispersed
Chy05g01463 Chy-Chr5:18411517 Chy06g00587 Chy-Chr6:3995793 1.11E-143 dispersed
Chy06g00587 Chy-Chr6:3995793 Chy09g01431 Chy-Chr9:15891305 1.19E-27 dispersed
Chy06g00587 Chy-Chr6:3995793 Chy10g00915 Chy-Chr10:14806135 4.62E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g479 . . . . . Bpe14g01182 . . . . Cma06g01416 . Car06g01221 . Sed02g1246 Cpe08g00255 . Bhi01g00823 Tan10g0855 Cmetu06g2393 . Hepe05g1540 . Lcy11g1531 . . . . . . . . . . Cone4ag0236 Lsi05g01427 . . Cme06g00617 Blo02g00544 . . Bda13g00130 . . . . . Cmo06g01418 . . . . . . . . . . . . . . Cla05g00553 Cam05g0603 Cec05g0612 Cco05g0610 Clacu05g0599 Cmu05g0569 Cre05g0638 . Csa03g01341 Chy06g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002288 2 3 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 4 2 2 2 2 2 2 2 1 2 6 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00587 Chy_Chr06 FPKM 71.411766 80.814995 90.808517 97.3806 9.106891 7.276042 7.687026 0.809846 1.030372 0.314654