Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00598 ATGGGGAAGAAGAAACATAAGCGGCCGGAACAGGAATCGGAGGCGCTTGACAGAGATGACTTCGAAGCTAACCATGAAACGGAGCTCATTGATGGATGCTCTCCTGAGAAAAAGAAGAAGAAGAAGAAGAAAGTTGAGAATGGTTCAATCGAGGCAGAGAGGAGGAAACCGATTTCCAAACCTACAGTGAGCATTGCGGTTTCCGGTTCCATCATTGATAATGCTCAATCCCTGGAGCTTGCCACCAGATTGGCTGGTCAAATTGCTCGTGCGGCAACAATATTTCGAATTGACGAGGTGGTGGTATTTGACAGTGGAAGGAGTTCAACGACTGGCTCAGAGGTTACGGCAGCGAACAATTCAGATGAGGATGAAAGTGGCGCTGCTTTCCTAATAAGGATCTTAAAATATCTTGAGACTCCACAATACTTGAGAAAAGCTCTTTTCCCAAAGCATAACAATTTAAGATTTGTGGGGATGTTGCCCCCTCTTGATGCCCCTCACCATTTGCGCAAGCATGAATGGGGTCCCTATCGAGAAGGTGTTACCCTGAAAGAAAGAGCTCCATATGCTAAAGGAACATTGGTTGATGTTGGTCTGAGTAAGAATGTTGTTGTTGATGAAATACTTGAACCTGGAACAAGAGTAACGGTAGCTATGGGAACAGATCGCAATTTATTTTCTGATCTGCCCCGCCAGGTGGTCTCATCCTCAAAGCCTGTGGAAGAAGGGCTTTACTGGGGTTATAGAGTGCGATATGCTTCTTCTTTGAGTGCAGTTTTTAAGGAGAGTTCATACGAGGGTGGTTATGATCATTTGATTGGTACCTCAGAGCACGGAATGGTTATAAAGTCCTCAGAACTAACACTACCTCCTTTCAGGCATCTATTGATTGCCTTTGGTGGACTTGCCGGTTTAGAAGAGAGCATTGAGGAAGACAACAACTTCAAGAGTAAAAATGCTCACGAGATCTTCTCATCATACTTGAATACATGTCCACTGCAAGGAAGCCGAACAATTCGAACAGAGATTATGGTGATAGCAAGTCATGCTATAAGTAGGACCTGA 1068 44.48 MGKKKHKRPEQESEALDRDDFEANHETELIDGCSPEKKKKKKKKVENGSIEAERRKPISKPTVSIAVSGSIIDNAQSLELATRLAGQIARAATIFRIDEVVVFDSGRSSTTGSEVTAANNSDEDESGAAFLIRILKYLETPQYLRKALFPKHNNLRFVGMLPPLDAPHHLRKHEWGPYREGVTLKERAPYAKGTLVDVGLSKNVVVDEILEPGTRVTVAMGTDRNLFSDLPRQVVSSSKPVEEGLYWGYRVRYASSLSAVFKESSYEGGYDHLIGTSEHGMVIKSSELTLPPFRHLLIAFGGLAGLEESIEEDNNFKSKNAHEIFSSYLNTCPLQGSRTIRTEIMVIASHAISRT* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4070566 4076133 - Chy6G111260.1 Chy06g00598 228307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00598 355 Gene3D - 173 238 IPR012340 -
Chy06g00598 355 Gene3D - 63 348 IPR029026 -
Chy06g00598 355 SUPERFAMILY alpha/beta knot 60 349 IPR029028 -
Chy06g00598 355 MobiDBLite consensus disorder prediction 1 36 - -
Chy06g00598 355 CDD HsC9orf114-like 62 343 IPR003750 -
Chy06g00598 355 PANTHER CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED 6 347 IPR003750 -
Chy06g00598 355 SUPERFAMILY Nucleic acid-binding proteins 167 248 IPR012340 -
Chy06g00598 355 MobiDBLite consensus disorder prediction 1 55 - -
Chy06g00598 355 Pfam Putative RNA methyltransferase 62 347 IPR003750 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00598 K09142 SPOUT1; methyltransferase [EC:2.1.1.-] - csv:101207949 655.595
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g459 . . . . . . . . . . Cma06g01425 Cma14g01689 Car06g01228 Car14g01522 Sed12g0906 . Cpe03g01423 Bhi01g00838 Tan10g0866 Cmetu06g1993 . Hepe05g1534 . Lcy11g1521 . . . . . . . . . . . Lsi05g01440 . . Cme06g00628 . Blo07g00211 Bda11g00567 . . Bpe13g00617 . Bma06g01546 . Cmo06g01428 Cmo14g01733 . . . . . . . . . . . . . Cla05g00564 Cam05g0620 Cec05g0630 Cco05g0625 Clacu05g0616 Cmu05g0584 Cre05g0652 . Csa03g01353 Chy06g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011621 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00598 Chy_Chr06 FPKM 92.622826 86.984604 79.557304 86.399498 129.22316 124.531578 112.215584 93.948639 100.875923 88.911713