Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00601 ATGGCCGTCTCCTCCGACTGCCCGATTGCCCTGTCGGCAGCCGCACCTGCCACTTCACTGGTGGTCCGGAGGAAGTTGACGTCTGTGGAGTTTGGCAATGGGGAATTCATGGGGAAGAAACTCACGGAACCCAAACGAGTACCTGCTGTTGCTGTTGCTATTAACGGCGTTCGGCGACGTGTTTGCATGTCTCTCACGACTAATGTAGCCATTGGCGATGCTGCGTTGAGAGAAATGGATACGGAGAAAAGGGACCCACGGACTGTGGTGGCGATCATTCTGGGGGGAGGAGCCGGCACTCGTCTATTCCCCCTCACCAAGCGGCGGGCCAAACCTGCTGTTCCAATAGGAGGAGCATATAGGCTGATCGACGTGCCAATGAGCAACTGTATCAATAGTGGAATTAATAAAGTCTATATCCTCACTCAGTTCAATTCAGCATCTTTAAATAGGCATCTTGCTCGGGCTTACAACTTCAGCGGTGGAGTCACCTTTGGAGATGGCTATGTTGAGGTTCTGGCTGCCACTCAAACGCCAGGGGAGGCTGGTAAAAATTGGTTTCAAGGTACAGCAGATGCCGTGCGACAATTCCACTGGCTTTTTGAGGATGCCAGAAGCAAGAATATTGAAGATGTGTTGATTCTGTCTGGAGATCATTTGTACAGAATGGACTATATGGATTTTGTTCAGAATCATAGGCAAAGTGGTGCAGATATCACTCTTTCTTGTCTGCCAATGGACGATAGCCGAGCCTCAGACTTTGGTCTAATGAAGATAGACGAAAAAGGAAGGATAATTTCATTCAGTGAAAAGCCTAAAGGACAGGACCTGAAGGCCATGGCAGTAGATACAACCATTTTAGGACTCTCGAAAGAAGAGGCTCAGAAGAAGCCATACATTGCTTCCATGGGAGTTTATGTCTTTAAGAAGGACATACTTTTGAATCTTTTAAGATGGCGCTTTCCAACTGCTAATGACTTTGGATCAGAGATTATCCCTGCCTCAGCCAAAGAATTCTTTATAAAGACGCAAACTAATGCTAACCTCAACAAATTTTCACAGGCTTATCTCTTCAATGATTACTGGGAAGATATTGGGACAATTAGATCCTTCTTTGAAGCAAACCTTGCCCTGACAGAGCAACCACCAAGGTTTAGTTTTTACGATGCTGCAAAACCAATGTTTACTTCAAGAAGAAACTTGCCGCCTACAAAGATTGACCAGAGCAAGATCGTAGATTCTATCATCTCACATGGAAGCTTCTTAAACAGTTGCTTTATAGAGCACAGTGTCATCGGTATCCGGTCGAGAATCAACTCAAACGTTCACTTGAAAGACACTGTGATGCTTGGAGCAGATTACTATGAAACTGAAGATGAAGTTGCATCTTTGTTAGCTGAAGGAAGAGTACCAATAGGAATAGGGGAAAATACAAAAATAAAGGACTGCATTATCGACAAGAATGCTAGAATCGGAAAGAACGTGGTCATTGCCAATTCAGAGGGCGTACAAGAGGCGGATAGATCTTCAGAAGGCTTCTACATACGTTCTGGCGTTACCATCATCTTAAAGAATGCAGTAATTAAAGATGGTTTGGTTATATAA 1605 44.67 MAVSSDCPIALSAAAPATSLVVRRKLTSVEFGNGEFMGKKLTEPKRVPAVAVAINGVRRRVCMSLTTNVAIGDAALREMDTEKRDPRTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHLARAYNFSGGVTFGDGYVEVLAATQTPGEAGKNWFQGTADAVRQFHWLFEDARSKNIEDVLILSGDHLYRMDYMDFVQNHRQSGADITLSCLPMDDSRASDFGLMKIDEKGRIISFSEKPKGQDLKAMAVDTTILGLSKEEAQKKPYIASMGVYVFKKDILLNLLRWRFPTANDFGSEIIPASAKEFFIKTQTNANLNKFSQAYLFNDYWEDIGTIRSFFEANLALTEQPPRFSFYDAAKPMFTSRRNLPPTKIDQSKIVDSIISHGSFLNSCFIEHSVIGIRSRINSNVHLKDTVMLGADYYETEDEVASLLAEGRVPIGIGENTKIKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYIRSGVTIILKNAVIKDGLVI* 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4110138 4114233 + Chy6G111290.1 Chy06g00601 228310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00601 534 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 301 311 IPR005836 GO:0005978|GO:0008878
Chy06g00601 534 CDD LbH_G1P_AT_C 402 528 - -
Chy06g00601 534 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE 3 534 - -
Chy06g00601 534 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 186 194 IPR005836 GO:0005978|GO:0008878
Chy06g00601 534 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 70 399 IPR029044 -
Chy06g00601 534 CDD ADP_Glucose_PP 91 365 - -
Chy06g00601 534 SUPERFAMILY Trimeric LpxA-like enzymes 398 534 IPR011004 -
Chy06g00601 534 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 95 114 IPR005836 GO:0005978|GO:0008878
Chy06g00601 534 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 3 534 IPR011831 GO:0005978|GO:0008878
Chy06g00601 534 SUPERFAMILY Nucleotide-diphospho-sugar transferases 88 496 IPR029044 -
Chy06g00601 534 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 89 498 IPR011831 GO:0005978|GO:0008878
Chy06g00601 534 Gene3D Hexapeptide repeat proteins 400 534 - -
Chy06g00601 534 Pfam Nucleotidyl transferase 91 380 IPR005835 GO:0009058|GO:0016779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00601 K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] - csv:101208605 1014.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00549 Chy-Chr1:3933251 Chy06g00601 Chy-Chr6:4110138 0 dispersed
Chy06g00601 Chy-Chr6:4110138 Chy11g00912 Chy-Chr11:12504374 0 dispersed
Chy06g00601 Chy-Chr6:4110138 Chy04g00484 Chy-Chr4:4640168 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g451 . . . . . Bpe14g01312 . . . Cmo17g00248 . Cma14g01686 . Car14g01520 Sed02g1259 . Cpe03g01421 Bhi01g00844 Tan10g0872 Cmetu11g1384 Lac12g2316 Hepe05g1531 . Lcy11g1518 Cla06g00553 Cam06g0596 Cec06g0594 . Clacu06g0582 Cmu06g0577 Cre06g1343 . . Cone7ag0226 . Lsi05g01444 . . Cme06g00631 . . . . . . Bma02g00687 . . . Cmo14g01731 . Cma17g00261 . Car17g00235 Cpe12g00217 . Bhi12g01815 . . . . . . Cla05g00567 Cam05g0623 Cec05g0633 Cco05g0628 Clacu05g0619 Cmu05g0587 Cre05g0655 Lsi09g01345 . Chy06g00601 Cme11g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003296 1 2 1 1 1 2 2 2 2 2 2 2 1 2 2 1 2 1 1 2 2 2 2 1 1 2 2 2 2 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00601 Chy_Chr06 FPKM 12.262369 12.813804 16.715322 16.829329 11.793404 13.654676 13.738161 16.308628 16.139669 19.802654