Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00608 ATGGCTTCAAATAATAACAATAATACAATCCCTGTCACCGTCTCCGCCACCTTCCCTCAACCGACGACAATGGACCATAATCTAGTTCGCCCAGTTTTGGGAGAGATGGTGGGGAGTTTTTTGTTGATTCTTTGCGTGAGCGGGGTAACGGCGACCGGGCAGCTGATGGGCAGTCAGATGGGTGTACTGGACTATGCCGTGGCTGCTGGTTTGACGGTGGGGGTTTTGACGTTCTGCTTTGCTCCCATTTCTGGTGCTCATTTTAATCCAGCCATCACTCTTGCCTCTGCCATTTCTGGTCACTTTCCATGGTCTAGGGTAATGGCATATGTGGTGGCTCAAACGACAGGTTGTGTAATGGCAACGTATGCAGCAATGTTTGTTTTTGGCATAAAACCACAACAGTTGATCACTCGACCACTTCATAATTATTCTTCTCCCTTTTCTGCCTTTTTCCTCGAACTTCTTTTAACTTTCATTCTCATGTTTCTCCTTTCTTCTTTATCCTATCAATCCCATTCAGTTCGTCAATTTTCTGGCTTTGTCATTGGAATGGCCATTGCCCTTGCGGTGTTTATTGCCGGGCCCATTTCCGGTGCATCAATGAACCCAGCAAGATCTTTAGGGCCGGCAATTGTTTCATGGGCTTTCGATGACATATGGATCTATATTACGGCTCCGGCCATCGGGGCCATCACCGGGGCCTTCATCAGCGACTTACTCCGCCTTAGTCCTCCACCGCCTCAACCTTCCAACGGCAAATATTTTGATCTCTCCTCCTCTGCCAATGCATATCTAATTACTTAG 807 47.46 MASNNNNNTIPVTVSATFPQPTTMDHNLVRPVLGEMVGSFLLILCVSGVTATGQLMGSQMGVLDYAVAAGLTVGVLTFCFAPISGAHFNPAITLASAISGHFPWSRVMAYVVAQTTGCVMATYAAMFVFGIKPQQLITRPLHNYSSPFSAFFLELLLTFILMFLLSSLSYQSHSVRQFSGFVIGMAIALAVFIAGPISGASMNPARSLGPAIVSWAFDDIWIYITAPAIGAITGAFISDLLRLSPPPPQPSNGKYFDLSSSANAYLIT* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4147482 4149130 - Chy6G111360.1 Chy06g00608 228317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00608 268 Pfam Major intrinsic protein 27 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g00608 268 Gene3D Glycerol uptake facilitator protein. 3 245 IPR023271 -
Chy06g00608 268 PRINTS Major intrinsic protein family signature 30 49 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g00608 268 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g00608 268 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g00608 268 PRINTS Major intrinsic protein family signature 221 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g00608 268 PRINTS Major intrinsic protein family signature 106 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g00608 268 PRINTS Major intrinsic protein family signature 69 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g00608 268 PANTHER AQUAPORIN NIP2-1 7 265 IPR034294 -
Chy06g00608 268 PANTHER AQUAPORIN NIP7-1-RELATED 7 265 - -
Chy06g00608 268 SUPERFAMILY Aquaporin-like 25 245 IPR023271 -
Chy06g00608 268 ProSitePatterns MIP family signature. 87 95 IPR022357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00608 K09874 NIP; aquaporin NIP - csv:101203206 481.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00608 Chy-Chr6:4147482 Chy06g01297 Chy-Chr6:12116921 3.14E-46 dispersed
Chy06g00608 Chy-Chr6:4147482 Chy04g02024 Chy-Chr4:25910361 5.98E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g437 . . . . . . . Bma05g00938 . . . Cma14g01679 . Car14g01513 . . Cpe03g01417 Bhi01g00854 . . . . . Lcy11g1511 . . . . . . . . . . Cone4ag0210 Lsi05g01452 . . Cme06g00639 . . . . Bpe05g00748 . . . . . Cmo14g01724 . . . . . . . . . . . . . Cla05g00575 Cam05g0630 Cec05g0641 Cco05g0635 Clacu05g0626 Cmu05g0594 Cre05g0662 . Csa03g01364 Chy06g00608 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010672 2 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00608 Chy_Chr06 FPKM 7.022414 6.471611 3.84032 4.117151 2.379449 1.498378 2.614119 1.538016 2.347622 2.281671