Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00616 ATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTCGGCACTCGAATATGGAACTTGAGCGATAGGCCAGTGGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGTTGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAACATACATGCCAGGAAGAAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGGTAAATTCACCGAGATTCATGGGCCAAAGGCCTTGGCTCAAGAAAGATCTCCTAATCATTCAATTAAGGTCAAGCAAACGTCGAGATCCAACTATCCAAAATGGAACACTAAATGCTACCAAGAGAGAAGGACGCGTGGTTATCATCTCCAGCGTTGGAAAACGACACGTCGGAATCAAGTTAAACGTAGAACCGTCAAATACGAAGCAGATGTCAACGGACGAACGGCGACTGTTCTTCAACTTCACACAAATTACTTCTCCCAATTTTTGAACAAAAAATATCCCAAATTTTCATTTCTTCTCCTCCGATCTCTCATTCTTGAAATGGGTATTTCATGGAGTAACAGAAGAAGAAACAACTACCTTCAAAACCCACCTCCACCTCCTCCTCCACCCTACCTTTCTTCTTCCTCCTTCTACTACCCCTCAGAACCCCAATCTCTTTCTCCTGCTCCACCTCCGCCGCCACCTCCGCCGCCGCTTCAGACTCATCAGTTTACTAACTCCCACCCTCCTCCGCCGCACAGCCACCCTTACAGTTCAACTTCTCAGCCACTACCTCTGCCACCGATTCCTCATCCTCCTCCCCCTGCCCCTGCTCCTCACTCCTATTACTTCTCTGGTGGGTACAATTCGTGTAATTATGGGAATTCTTCGATGGGGCGTTTCAATTTTTACCCTTATTATGCTAATCAGAGTAATGGATGGTCTCAAGTTCGGCCGCCCATGGGTCCACCGTTGCTTCCGCCACCGCCTTTGCCGATTGTGGAGCATCGGCAAGCGAAGAAGGTTAGAAATGATGTGAATGTACATAAAGATACTTTAAAGATTGAGGTGGACGAGCAGAACCCTGATCATCATTTGGTTTCTTTCGTTTTTGATGCGTTGTATGATGGAAGCATAACCATTCTATTTTTTGCCAAGGAAGAGCCCAATTGTAGGTTTGTTCCAGTATATCCCGATGCCTTCAAGCCAGTAAAAATCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCCGTTGGAACTGGCTTTGACTTGGGATTTTTTGACTTGGATGACCTCTCAAAACCTTCACCTGCAGAAGACACGTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCATCTCAGTCCGATGACGAACGAATTGGTGAACCTCGACGAGATAATTCACACATGCAGATAACTCAAGCTGTTTTGGAGAAGAAAAATGGTGGTCCTTTCCAGGTTAGAGTGATTAGGCAACTACTGTGGATTGATGGAGTCAGATATGAGCTGCGTGAAATATTTGGAATAGGGAGTTCATCAGCAGAAGGTTTTGATGATAATGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACTGCTGTACTACCATGCCGACATTTGTGCATGTGCAGTGAATGTGCCAAGGAACTGAGGCTTCAATCCAATAAATGTCCTATTTGCCGTCAACCAATTGAAGAACTAATAGAAATCAGGATAAACAATAGCGACCAATGA 1920 44.69 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKCKSIYKTYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEIRIFRDHQRGCISGKFTEIHGPKALAQERSPNHSIKVKQTSRSNYPKWNTKCYQERRTRGYHLQRWKTTRRNQVKRRTVKYEADVNGRTATVLQLHTNYFSQFLNKKYPKFSFLLLRSLILEMGISWSNRRRNNYLQNPPPPPPPPYLSSSSFYYPSEPQSLSPAPPPPPPPPPLQTHQFTNSHPPPPHSHPYSSTSQPLPLPPIPHPPPPAPAPHSYYFSGGYNSCNYGNSSMGRFNFYPYYANQSNGWSQVRPPMGPPLLPPPPLPIVEHRQAKKVRNDVNVHKDTLKIEVDEQNPDHHLVSFVFDALYDGSITILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPAQKFFQPVGTGFDLGFFDLDDLSKPSPAEDTFPLVISAETCSPSQSDDERIGEPRRDNSHMQITQAVLEKKNGGPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHLCMCSECAKELRLQSNKCPICRQPIEELIEIRINNSDQ* 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4183984 4190079 - Chy6G111440.1 Chy06g00616 228325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00616 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 633 IPR013083 -
Chy06g00616 639 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 583 623 IPR045195 -
Chy06g00616 639 SUPERFAMILY RING/U-box 583 630 - -
Chy06g00616 639 ProSiteProfiles Zinc finger RING-type profile. 584 623 IPR001841 -
Chy06g00616 639 PANTHER MAHOGUNIN 242 638 IPR045194 GO:0061630
Chy06g00616 639 MobiDBLite consensus disorder prediction 279 327 - -
Chy06g00616 639 Pfam Zinc finger, C3HC4 type (RING finger) 582 628 - -
Chy06g00616 639 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 242 638 - -
Chy06g00616 639 SMART ring_2 584 622 IPR001841 -
Chy06g00616 639 MobiDBLite consensus disorder prediction 274 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02172 Chy-Chr1:26319913 Chy06g00616 Chy-Chr6:4183984 1.62E-07 dispersed
Chy04g02071 Chy-Chr4:26192073 Chy06g00616 Chy-Chr6:4183984 1.05E-88 dispersed
Chy05g00517 Chy-Chr5:5606656 Chy06g00616 Chy-Chr6:4183984 3.79E-07 dispersed
Chy06g00616 Chy-Chr6:4183984 Chy11g00856 Chy-Chr11:12032235 1.66E-06 dispersed
Chy06g00616 Chy-Chr6:4183984 Chy10g01275 Chy-Chr10:17288366 2.92E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00616 - - csv:101203938 705.286