Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00654 ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTCGTTCAAGATGGATCCACGCCCGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTCTTGGTTAGAATCGAGAGTTCTGAGAATGCTTGGCCTCCGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCTGCTAGATTGACGTTTCCTATTTCTGTTAAACAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCTCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTTTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACCATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTATCACCTAAAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAATTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTTTAATGGATGCTATTCCTGCCTCTTCTATCGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCGAGCCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACGCAGACAATCAACCATCGAGATCTTCAACTGATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCGCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACGATCGCTTCAGTGAAAAATTTTCAGTTAGTAGCTTCACCTGAAAATGGAGTTGCCGGACCTGAACATGAGAAGATCATTCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACTATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1164 45.53 MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPPRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMHCLMDAIPASSIEPGGVAPIQTEFSPSRIDFLPSLRFSWSKSNHADNQPSRSSTDQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGVAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4489235 4492307 + Chy6G111820.1 Chy06g00654 228363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00654 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Chy06g00654 387 Pfam F-box domain 38 82 IPR001810 GO:0005515
Chy06g00654 387 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 387 - -
Chy06g00654 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Chy06g00654 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Chy06g00654 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Chy06g00654 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Chy06g00654 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Chy06g00654 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Chy06g00654 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Chy06g00654 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Chy06g00654 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Chy06g00654 387 PANTHER TUBBY-RELATED 1 387 - -
Chy06g00654 387 Pfam Tub family 96 382 IPR000007 -
Chy06g00654 387 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515
Chy06g00654 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00654 Chy11g01469 CCT
Chy06g00654 Chy11g01469 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00654 Chy-Chr6:4489235 Chy07g01239 Chy-Chr7:17147729 5.15E-144 dispersed
Chy03g00507 Chy-Chr3:6981256 Chy06g00654 Chy-Chr6:4489235 4.60E-154 transposed
Chy06g01095 Chy-Chr6:9150966 Chy06g00654 Chy-Chr6:4489235 5.33E-152 transposed
Chy11g01469 Chy-Chr11:21443334 Chy06g00654 Chy-Chr6:4489235 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18113 PF01167 Tub 7.10E-111 CL0395 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00654 K19600 - csv:101217713 778.859