Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00669 ATGTTTGGGTTTCGACGGCGAATGAAGCTTGGGAGATTGAAAGTCCAGCTTTCGGATCCTGCTCAGGGAACTAGGAGTCCTATTCGAAACCCCAAGCGAGGGAGCGGTTCTAATAGTGAATGTGCTGCGCCGGCTAGTAGGCATTCTGAAGAGCATGATGAGGGGCAACGAGCTTCTGACGTTCCAGATATTAGTAATAATGGTGCTTCGGGACAGTCTGAGAATTGGATGGTCTTATCAATTGCAGGGGAAAAGCCAGCTCCTCGTTTCAATCATGCCGCAACTGTGATTGGAAATAAGATGATTGTTGTTGGTGGTGAATCTGGGAGTGGATTATTAGATGATGTTCAGGTTCTTAATTTTGATAAATTTACTTGGACCAGAGCCTCATCAAAGCTTTACCTGTCACCTAGCTCACTTCCATTGAAGATCCCTGCATGCAAGGGTCACAGCCTGGTTTCTTGGGGGAAGAAAGCTCTCTTGGTTGGGGGTAAGACAGAGCCAGGAAATGAGAGAGTGGCAGTGTGGGCATTTGACACAGAGACAGAATGTTGGTCGCTGATGGAAGCAAAGGGAGATATACCTGTTGCTAGAAGTGGTCACACTGTAGTTAGAGCTAGCTCTGTTTTAATCCTTTTTGGAGGTGAAGATAGTAGGAGGAGAAAACTCAACGACCTTCACATGTTTGACCTTAAATCTTTTACTTGGCTCCCTCTACATTGCACAGGAACAGGACCATCTGCAAGATCCAACCATTTGGCAGCACTTTATGATGATAAAACTCTACTTATATTTGGAGGGACATCAAAATCCCGAACCCTGAACGATTTATATTCGCTCGACTTTGAAACAATGGTGTGGTCAAGAATAAAGGTACGGGGTTTTCACCCATCACCTAGAGCTGGTTGCTGTGGCGTTCTCTGTGGAACTAAATGGTGCATAGCAGGGGGTGGAAGCAGAAAAAAGAGACATGCGGATACTTTGATCTTTGACATACTGAAACTTGAGTGGTCCGTCGCTCTCACATCACCTCCATCTTCTGTCACCACCAATAAGGGTTTCAGCTTAGTGCTCGTGCAGCACAAGGAGAAGGATTTTCTTCTTGCATTTGGGGGATCCAAAAAGGAGCCATCAAATCAGGTTGAAGTATTGACCATGGAAAAGAAGGAGCCATCTTTGAGGCACCGATCCAATCCCATTGACTCAACTGCTAGACAAAATCTAGCATCTGCTATTGAACATGGTTCTGGAAGAAAATCCATTTCAGAGACCTCGCTTGTCGATCCAAATCCTATTCCTGGAAATATTTCACTCCGCAAGCAATTTCATAATGATGAATCCTTTGACAAAACTACTAAGATAACCAAGACTGCAGAAGATGATTCCTCCACTTCTCAGGTAACAGAGAACAAGTTGACTCAATCTGGGGGTGAATTCCATGGGGAGACACTGCCTTCAGCATACGAGTATGAAAGCTCAAATCCCTTCAAGGAAGGAGTTGGATACCACCATCCCATTGATAACACTGATCTATTCAGCGAAAGCAGTGGTAAAATAGTAACATCATCCACTTTTTCAAGTATATATCAATTCTATGAAGCGAAAATGGCAGCCTTAATCAGAAAGAATGGAGTTCTCGAAGGGCAACTAGCAGCAGCAACGGCGAGCCGAGAAGCCGTGGAGAAAAACTTATCCTCTGCTCTAAAGATCCGGCAGGAGATGGAGAAAAGAATAGCTGATATGATAAAGGAAATGGAAATGCTGAGAGATAAGCTGGCAGGAGTAGAAATAGCAAAAGAAGAGGCCAATAGTTTGTCAAATATTGTCCACTCTGACAATGTACGCCTTGAACATGATGTTGCTTTTCTCAAAGCAGTTTTGGATGACACTCAGAAGGAGCTTCATTCTACTAGAGGAGTCCTTGCTGGAGAAAGGTCTAGGGCCTTCCAACTACAGGTAGAGGTATTTCATCTAAAGCAAAGATTGCAATCCATGGAGAACCGAGCACCAACACCAAGGAAACCGTTCCACATGTAG 2037 44.33 MFGFRRRMKLGRLKVQLSDPAQGTRSPIRNPKRGSGSNSECAAPASRHSEEHDEGQRASDVPDISNNGASGQSENWMVLSIAGEKPAPRFNHAATVIGNKMIVVGGESGSGLLDDVQVLNFDKFTWTRASSKLYLSPSSLPLKIPACKGHSLVSWGKKALLVGGKTEPGNERVAVWAFDTETECWSLMEAKGDIPVARSGHTVVRASSVLILFGGEDSRRRKLNDLHMFDLKSFTWLPLHCTGTGPSARSNHLAALYDDKTLLIFGGTSKSRTLNDLYSLDFETMVWSRIKVRGFHPSPRAGCCGVLCGTKWCIAGGGSRKKRHADTLIFDILKLEWSVALTSPPSSVTTNKGFSLVLVQHKEKDFLLAFGGSKKEPSNQVEVLTMEKKEPSLRHRSNPIDSTARQNLASAIEHGSGRKSISETSLVDPNPIPGNISLRKQFHNDESFDKTTKITKTAEDDSSTSQVTENKLTQSGGEFHGETLPSAYEYESSNPFKEGVGYHHPIDNTDLFSESSGKIVTSSTFSSIYQFYEAKMAALIRKNGVLEGQLAAATASREAVEKNLSSALKIRQEMEKRIADMIKEMEMLRDKLAGVEIAKEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERSRAFQLQVEVFHLKQRLQSMENRAPTPRKPFHM* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4586155 4592793 + Chy6G111970.1 Chy06g00669 228378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00669 678 Coils Coil 557 605 - -
Chy06g00669 678 MobiDBLite consensus disorder prediction 19 44 - -
Chy06g00669 678 Pfam Galactose oxidase, central domain 210 255 - -
Chy06g00669 678 Pfam Galactose oxidase, central domain 156 204 - -
Chy06g00669 678 MobiDBLite consensus disorder prediction 45 59 - -
Chy06g00669 678 Gene3D - 191 397 IPR015915 GO:0005515
Chy06g00669 678 Coils Coil 613 633 - -
Chy06g00669 678 Pfam Kelch motif 88 131 IPR006652 GO:0005515
Chy06g00669 678 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 677 - -
Chy06g00669 678 MobiDBLite consensus disorder prediction 458 480 - -
Chy06g00669 678 MobiDBLite consensus disorder prediction 442 457 - -
Chy06g00669 678 SUPERFAMILY Kelch motif 74 341 IPR015915 GO:0005515
Chy06g00669 678 MobiDBLite consensus disorder prediction 417 431 - -
Chy06g00669 678 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 1 677 - -
Chy06g00669 678 MobiDBLite consensus disorder prediction 412 483 - -
Chy06g00669 678 Gene3D - 53 190 IPR015915 GO:0005515
Chy06g00669 678 MobiDBLite consensus disorder prediction 1 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00669 - - - csv:101220563 1339.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01087 Chy-Chr5:15351146 Chy06g00669 Chy-Chr6:4586155 5.70E-08 dispersed
Chy06g00669 Chy-Chr6:4586155 Chy10g01256 Chy-Chr10:17108081 1.66E-12 dispersed
Chy06g00669 Chy-Chr6:4586155 Chy02g02640 Chy-Chr2:29445162 1.34E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g346 . . . . . Bpe14g01142 . . . . Cma06g01478 Cma14g01635 Car06g01272 Car14g01462 Sed02g1213 Cpe08g00204 Cpe03g01377 Bhi01g00968 Tan10g0971 Cmetu06g2006 . Hepe05g1470 . Lcy11g1437 . . . . . . . . . Cone7ag0168 Cone4ag0165 Lsi05g01515 . . Cme06g00705 Blo02g00587 . . Bda13g00168 . . . . . Cmo06g01475 Cmo14g01674 . . . . . . . . . . . . . Cla05g00628 Cam05g0688 Cec05g0697 Cco05g0694 Clacu05g0682 Cmu05g0650 Cre05g0721 . Csa03g01429 Chy06g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007218 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00669 Chy_Chr06 FPKM 9.757428 12.163276 12.635254 13.05522 12.92331 12.740699 15.939747 21.003069 22.587843 22.157331