Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00671 ATGGCCGCCATTTCAATTTGCTTCGCTCCTCAAGCTCTGGCACGGCCCAGAGTTTGGAACCCTAAAAGCACACCATCACCCAAGAAGCTTCGTGGGAACAATAAGCTTGATCGCAACAGCGTCAAGATCAAAACCAATTCGAAAGAGTTATCTTCCATTGGCGTTGAAGCCACCACTTACACTCGCCTCCCACCCAGGGAAGACTTTGCTATTCTTAGCTTTGATTCCCCGTCTTTTGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAAGGATTCTTCTGAGGTGAAGCTTTTGGATTCGGATGTTGCGATAATTGAGGGAGACGATGATTTGGATTATTTGAAATATGAAGATGGGGAGGAAGAAGGGGATGGAGAGTTGGACGGAAAATTGGGGTTTGAAAATGGGTACGAGAAGTTTGAAGTGTTTGAAGGGGAATATGATGCTGAAATGGAGGAGTATGGTGATAGTGACGTGGAAGAGGAAGATGAAGAAGGAGAGAAGCTTTTGGCGTTTAGGAAGGGGAAATTTGTTAATGCCGATGAAGCTTACGATACTGGCGAAGAAGGAAGCTCTTTCATTGAGATTGAAGATGGGAAGGAGAAGGGGGTGCCAGCCGTAATGCGGTGCTTTGATCGAGCGAAAATCTACGTTAAAGCTGGAGACGGCGGAAATGGTGTTGTGGCATTTCGGCGAGAGAAGTATGTGCCTATGGGTGGCCCATCAGGAGGAGATGGAGGTAGAGGTGGGAATGTGTATGTTGAAGTTGACGAGTCGATGAATTCGCTATTGCCATTTCGAAATGGTATACATTTTCGTGCTGAAAGAGGTAGTCATGGGCAGGGTAGAATGCAAAATGGGGCAAAGGGGGAGGATGTTGTGGTCAAGGTGGCGCCGGGAACAGTGATCAGAGACGCATTTAGCCAGGAGGTTCTTTTGGAATTATTGCAGCCGGGGCAGCGTGCACTGTTGCTGCGTGGTGGAAGGGGTGGAAGAGGCAATGCATCATTCAAGTCCGGAACAAATAAGGTTCCAAAGATTTCAGAAAATGGAGAAGAGGGTTCAGAAATGTGGTTGGAGTTGGAGCTAAAGCTTGTTGCAGACGTTGGAATCGTGGGGGCACCAAATGCAGGGAAAAGCACACTTTTGAGCGTGATAAGTGCTGCACAGCCAGCCATAGCAAATTACCCGTTTACCACTCTACTCCCAAACTTAGGCGTAGTTTCGTTTGATTATGATTCAACTATGGTAGTAGCAGATCTTCCAGGATTACTCGAAGGGGCACATGAGGGCTTTGGTTTAGGTCATGAATTTCTACGTCACACCGAGAGGTGTTCTGCACTGGTGCATGTGGTTGATGGATCGGGACCACAACCAGAATATGAATTTGATGCTGTTCGTTTGGAGTTGGAGCTCTTCAGCCCTGAACTAGCTGAAAAGCCCTATCTTGTGGCATATAATAAAATGGATCTTCCTGAAGCGTATGAAAACTGGCCAGCATTCAAGGAAAAGTTACAAGCTCGCGGGATTGAACCTTTTTGCATGAGTGCTGTAAAACGAGAGGGCACTCATGAAGTCATTAGTGCTTCATATCAGCTGTTAAGGGAGAATAAAGAAAACAACAAGGCATTTCAAGGTGGGAAAATACCAGAGAATTTGGACCATGTGGCAGATAGAATACACAAGCAGCGTAGTGCTTCTATTGATGACTATGAAATTGTTAATGATAGTGGTTCATGGCATGTAGTAGGATCTGGTCTACAACGTTTTGTTCAGATGACAAATTGGCGTTACATGGAGTCTGAAAGAAGGTTCCAACATGTCATGGAGGCTTGTGGTGTCAACAAGTCTCTCAGAAAACTTGGCGTAAAGGAGGGTGACACAGTATTTGTTGCAGAGATGGAGATGATCTGGCATGATTCACCAAATAGTTCTGGTCCATCTAATATGAAGAAAAGATCGGATTCTGTCAAATGGCCAGAGTGGAAGTAA 1995 45.46 MAAISICFAPQALARPRVWNPKSTPSPKKLRGNNKLDRNSVKIKTNSKELSSIGVEATTYTRLPPREDFAILSFDSPSFDSSSSSSSSSSKDSSEVKLLDSDVAIIEGDDDLDYLKYEDGEEEGDGELDGKLGFENGYEKFEVFEGEYDAEMEEYGDSDVEEEDEEGEKLLAFRKGKFVNADEAYDTGEEGSSFIEIEDGKEKGVPAVMRCFDRAKIYVKAGDGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNGIHFRAERGSHGQGRMQNGAKGEDVVVKVAPGTVIRDAFSQEVLLELLQPGQRALLLRGGRGGRGNASFKSGTNKVPKISENGEEGSEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHEGFGLGHEFLRHTERCSALVHVVDGSGPQPEYEFDAVRLELELFSPELAEKPYLVAYNKMDLPEAYENWPAFKEKLQARGIEPFCMSAVKREGTHEVISASYQLLRENKENNKAFQGGKIPENLDHVADRIHKQRSASIDDYEIVNDSGSWHVVGSGLQRFVQMTNWRYMESERRFQHVMEACGVNKSLRKLGVKEGDTVFVAEMEMIWHDSPNSSGPSNMKKRSDSVKWPEWK* 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4600803 4605823 + Chy6G111990.1 Chy06g00671 228380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00671 664 SUPERFAMILY Obg GTP-binding protein C-terminal domain 572 641 IPR036346 -
Chy06g00671 664 MobiDBLite consensus disorder prediction 77 96 - -
Chy06g00671 664 MobiDBLite consensus disorder prediction 642 664 - -
Chy06g00671 664 CDD Obg 368 535 IPR031167 GO:0005525
Chy06g00671 664 Pfam 50S ribosome-binding GTPase 369 489 IPR006073 GO:0005525
Chy06g00671 664 Hamap GTPase Obg [obg]. 210 536 IPR014100 GO:0000287|GO:0003924|GO:0005525
Chy06g00671 664 ProSitePatterns GTP1/OBG family signature. 421 434 IPR006074 GO:0005525
Chy06g00671 664 MobiDBLite consensus disorder prediction 17 38 - -
Chy06g00671 664 Pfam GTP1/OBG 213 366 IPR006169 -
Chy06g00671 664 TIGRFAM Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 573 639 IPR015349 GO:0000166
Chy06g00671 664 TIGRFAM Obg_CgtA: Obg family GTPase CgtA 212 534 IPR014100 GO:0000287|GO:0003924|GO:0005525
Chy06g00671 664 ProSiteProfiles Obg domain profile. 209 367 IPR006169 -
Chy06g00671 664 ProSiteProfiles Obg C-terminal (OCT) domain profile. 564 641 IPR015349 GO:0000166
Chy06g00671 664 SUPERFAMILY Obg GTP-binding protein N-terminal domain 212 366 IPR036726 -
Chy06g00671 664 Gene3D GTP1/OBG domain 207 366 IPR036726 -
Chy06g00671 664 MobiDBLite consensus disorder prediction 77 94 - -
Chy06g00671 664 PRINTS GTP1/OBG GTP-binding protein family signature 436 454 IPR006073 GO:0005525
Chy06g00671 664 PRINTS GTP1/OBG GTP-binding protein family signature 370 390 IPR006073 GO:0005525
Chy06g00671 664 PRINTS GTP1/OBG GTP-binding protein family signature 391 409 IPR006073 GO:0005525
Chy06g00671 664 PRINTS GTP1/OBG GTP-binding protein family signature 419 434 IPR006073 GO:0005525
Chy06g00671 664 Pfam Domain of unknown function (DUF1967) 573 639 IPR015349 GO:0000166
Chy06g00671 664 Gene3D - 367 546 IPR027417 -
Chy06g00671 664 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 167 614 IPR045086 GO:0003924|GO:0005525
Chy06g00671 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 539 IPR027417 -
Chy06g00671 664 Gene3D - 573 642 IPR036346 -
Chy06g00671 664 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 368 536 IPR031167 GO:0005525
Chy06g00671 664 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 2 167 614 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00671 - - - csv:101207804 1150.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00466 Chy-Chr4:4356115 Chy06g00671 Chy-Chr6:4600803 1.24E-49 dispersed
Chy06g00671 Chy-Chr6:4600803 Chy10g01353 Chy-Chr10:17785159 8.39E-10 dispersed
Chy06g00671 Chy-Chr6:4600803 Chy06g00310 Chy-Chr6:2072352 1.00E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00671 Chy_Chr06 FPKM 0.0 0.0 0.0 0.0 2.042882 1.528607 2.726366 0.0 0.0 0.438163