Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00684 ATGATGATGGAAGATCTTACCGAAGAAGAAAGACGAGCTTTACGCGGAAGCAAGTTCGCTCCTCTCCCATCGCAATCCACTTCTTCTCGATCTCACCCAAGGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTATTTGCGTATCTAGGGTTTTCTCTTCTAACCAATGGGGTTTCTATTCAAAGGTTGGCTCATCCAGGTGGACCATTGAAAACCAACAAAGCCGCCGCTCTCGCTAAGTTTCTTCACCGGAAATTGAACCAAGATCCTAACGCTCTCTCTTCTATTAATCCCCAGATTTTAAACCTTGCTGTTCGTAATGCCAAAGCCTCTGTTCATTCCAGTGGTACAAATATCCGGCATGTGGACACATTTGATGACCCTGAGGCTTCTTTTGATGAAGGGGAATCTATGAATTCTGAGCCTAAGAAACAAAAGAAGAACAAGAAGAACAAGAAGAACAAGAAGAAGAAAAATAAGAATAAGAAGAATAAAAGGCAAAAGATTCTTGAGGACTCCGAGTGTGGCGTTGGGGGAAAACCCAAAAAGAAGTTGAGATTGTGA 570 41.93 MMMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRFLLLLLLLLLLHLFAYLGFSLLTNGVSIQRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILNLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESMNSEPKKQKKNKKNKKNKKKKNKNKKNKRQKILEDSECGVGGKPKKKLRL* 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4676111 4677025 - Chy6G112120.1 Chy06g00684 228393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00684 189 MobiDBLite consensus disorder prediction 114 189 - -
Chy06g00684 189 MobiDBLite consensus disorder prediction 147 166 - -
Chy06g00684 189 Coils Coil 145 174 - -
Chy06g00684 189 MobiDBLite consensus disorder prediction 167 183 - -
Chy06g00684 189 PANTHER OS07G0669600 PROTEIN 3 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00684 - - - csv:101221899 251.906
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g334 . . . . Bpe04g01127 . . . . . . Cma14g01631 . Car14g01457 Sed02g1196 . Cpe03g01373 Bhi01g00978 Tan10g0983 Cmetu06g1761 . Hepe05g1461 . Lcy11g1429 . . . . . . . . Cone15ag0780 . . Lsi05g01525 . . Cme06g00715 . . . . . . . . . . Cmo14g01668 . . . . . . . . . . . . . Cla05g00635 Cam05g0696 Cec05g0709 Cco05g0705 Clacu05g0691 Cmu05g0658 Cre05g0730 . Csa03g01443 Chy06g00684 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011441 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00684 Chy_Chr06 FPKM 2.599835 3.120972 6.403765 5.239781 5.609829 6.21066 6.055943 6.469069 6.517942 7.650969