Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00709 ATGGCGGAGCAGGTAATGGTGATTGGCGTTGATGAAAGTGAGCACAGCTTCTACGCCTTGGATTGGACGCTTCAACATTTCTTTAGGCCTAACGCCACTCCTTACAAGCTCACTATTGTCAATGCTACACTTCCCTCGACCCCTCATGGAGCCTCCTTCCTAGGATCCCCGAATTTGTTGCCCACGATCGATGCAGATTTGAAGAAACTAACTAATAGGACGGTCCAAAGAGCGAAGGATATATGCATCGAACACAATGTTCAAAGCGTGGAGACTGAAGTTGTGGAGGGTGATGCGAGAAATGTATTATGCGATTCTGTAGAAAAATTCCATGCATCCATTTTGATTGTTGGAAGTCATGATTATGGAGTAGTAAAGAAGATGGGACTGGGCAGTGTTAGTGACTACTGTGCTCAGCATGCCCACTGCTCTGTCATGATTGTGAAGAGGCCACCCAAGCCCATGAGCTAA 471 46.5 MAEQVMVIGVDESEHSFYALDWTLQHFFRPNATPYKLTIVNATLPSTPHGASFLGSPNLLPTIDADLKKLTNRTVQRAKDICIEHNVQSVETEVVEGDARNVLCDSVEKFHASILIVGSHDYGVVKKMGLGSVSDYCAQHAHCSVMIVKRPPKPMS* 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4827008 4828977 + Chy6G112370.1 Chy06g00709 228418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00709 156 PRINTS Universal stress protein signature 109 121 IPR006015 -
Chy06g00709 156 PRINTS Universal stress protein signature 127 149 IPR006015 -
Chy06g00709 156 PRINTS Universal stress protein signature 3 21 IPR006015 -
Chy06g00709 156 Gene3D HUPs 1 156 IPR014729 -
Chy06g00709 156 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 154 - -
Chy06g00709 156 Pfam Universal stress protein family 5 149 IPR006016 -
Chy06g00709 156 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 3 153 - -
Chy06g00709 156 PANTHER - 3 153 - -
Chy06g00709 156 CDD USP_Like 6 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00709 - - - csv:101211959 314.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01688 Chy-Chr1:22779114 Chy06g00709 Chy-Chr6:4827008 6.96E-43 dispersed
Chy05g01049 Chy-Chr5:15056488 Chy06g00709 Chy-Chr6:4827008 1.80E-27 dispersed
Chy06g00709 Chy-Chr6:4827008 Chy10g01159 Chy-Chr10:16465795 2.47E-18 dispersed
Chy06g00709 Chy-Chr6:4827008 Chy07g01645 Chy-Chr7:20434460 1.41E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g294 . . . . . Bpe14g01127 . . . . Cma06g01503 . Car06g01294 . . Cpe08g00181 . Bhi01g01022 Tan10g1014 Cmetu06g1461 . Hepe05g1442 . . . . . . . . . . . . . . . . Cme06g00737 Blo02g00504 . . . . . . Bma06g01498 . Cmo06g01501 . . . . . . . . . . . . . . Cla05g00657 Cam05g0719 Cec05g0729 Cco05g0728 Clacu05g0713 Cmu05g0678 Cre05g0752 . Csa03g01472 Chy06g00709 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000594 1 7 3 4 3 2 4 2 2 4 3 2 5 5 4 5 2 4 4 2 4 4 4 3 3 4 4 2 5 3 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00709 Chy_Chr06 FPKM 51.121662 51.393044 33.297394 35.603367 27.199669 23.828598 27.656851 36.936646 38.140827 43.604347