Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00721 ATGGCAACGGCATACGCAAATCTTCTGAATGTCGGAACCAAAATCATCGCCGTCGGCCGGAACTACGCCGCCCATGCCAAAGAACTTGGCAACGCCGTCCCCAAGGAGCCTGTTTTGTTTATGAAACCCACGTCGTCTTACTTGCAAAATGGAGGCACGATCGAGATTCCTCACCCTCTTAAGTCTTTGGATCATGAGGTTGAGCTCGCCGTCGTGATCTCCCAGAGAGCTCGTGATGTTTCTGAAGCCTCCGCCATGGATTATGTTGGGGGTTATGCTCTTGCTCTGGACATGACTGCCCGAGAAATCCAAGCTTCTGCAAAGTCTGCAGGCCTTCCATGGACAGTAGCCAAAGGGCAGGACACCTTTACACCCATCAGTTCTGTTCTGTCCAAGGCATCAATCCCTGATCCGGATGATTTAGAATTGTGGTTAAAGGTAGATGATGAGTTTCGACAGAAGGGCTCAACCAAGGATATGATCTTTAAAATCCCATACCTCATTAGCCACATAAGTTCCCTCATGACCCTTCTTGAAGGAGACGTGATATTAACAGGAACTCCCTCAGGCGTTGGCCCAGTGAAGGCAGGTCAGAAGGTGACAGCAGGGATAACAAATATCATAGATGTTCACTTCAATGTCGAAAACCGGAAGAAACCATAA 663 48.57 MATAYANLLNVGTKIIAVGRNYAAHAKELGNAVPKEPVLFMKPTSSYLQNGGTIEIPHPLKSLDHEVELAVVISQRARDVSEASAMDYVGGYALALDMTAREIQASAKSAGLPWTVAKGQDTFTPISSVLSKASIPDPDDLELWLKVDDEFRQKGSTKDMIFKIPYLISHISSLMTLLEGDVILTGTPSGVGPVKAGQKVTAGITNIIDVHFNVENRKKP* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4913503 4916067 + Chy6G112490.1 Chy06g00721 228430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00721 220 Gene3D - 2 217 IPR036663 GO:0003824
Chy06g00721 220 Pfam Fumarylacetoacetate (FAA) hydrolase family 14 211 IPR011234 GO:0003824
Chy06g00721 220 PANTHER - 2 219 - -
Chy06g00721 220 PANTHER ACYLPYRUVASE 2 219 - -
Chy06g00721 220 SUPERFAMILY FAH 13 215 IPR036663 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00721 K01557 FAHD1; acylpyruvate hydrolase [EC:3.7.1.5] - csv:101207065 431.024
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g161 . . . . . . . . . . . Cma14g01612 . Car14g01431 . . Cpe03g01354 . . . . . . . . . . . . . . Cone14ag0751 Cone15ag0758 . . . . . . . Blo07g00169 Bda11g00520 . . Bpe13g00670 . Bma06g01495 . . Cmo14g01650 . . . . . . . . . . . . . Cla05g00667 Cam05g0731 Cec05g0739 Cco05g0738 Clacu05g0724 Cmu05g0689 Cre05g0763 . Csa03g01484 Chy06g00721 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010280 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00721 Chy_Chr06 FPKM 3.07619 5.235054 10.097793 7.352139 21.674921 14.219155 18.330902 8.410039 6.085156 5.743956