Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00724 ATGTCTGATCAAGGGAAGAACAAGAAAGCTGCTCTCATCGGTGTATCTTCCTTGTTTCTTGTTGCCATGGTAGTTGCAGTGGCAGTCGGGGTCAATCGAAATAACCCCACCACCAGCGGTGGTGGCGACAGTGCCGCCACAGCCGAGATTTCGACCTCCACCAAAGCAGTCAAGGCTCTCTGTCAGCCCACTGACTACCAAGAAACCTGCGAGAAAGCTCTGTCTGAGGCCGGAACCAACACGAGCGACCCACGTGAGCTAATCAAAGCTGGATTCAATGTCGCCGTCAACGAAATCAAATGGGCCATTGGAAATTCCACCACTTTGAAAGAAGCCGCCTCTGACCCAATGGCTAAACAAGCCCTTGACGCTTGTGGTGAGCTTATGGATTATGCAATTGACGATCTCGTAATTTCCTTTGAAAGAATCACAGACAATTTCGACATGCAGAAACTCGATGATTACATCGAAGATCTTAAGGTTTGGTTGAGTGGCGCATTGACTTATCAAGAAACTTGCATAGACGGCTTCGAAAATGTCACCGGCGATACCGGGGAAAAGATGACGAAATTGTTGGAAACGTCGAAAGAATTGACAATTAATGGGCTTGGAATGGTGAGTGAAGTTACTTCCATAATGACCTCTTTTGGGCTCCCAGCAGCTGGACGACGGTTAATGACGGCGGAATCTAATGAACAAAGCGAAGAACCGTCGTGGGTCAGCGACAGACGGGGGCTTCTCCAAGCCACCGGCGCCAACATCAAGGCGGATGTCGTGGTGGCGAAAGACGGAAGTGGAAAGTACAAAACTGTGAGTGCAGCCTTAAATGATGTCCCAAAGAAGAGCAATAAAACGTTTGTGATTTACGTTAAGGCAGGGGTTTATCAAGAACAAGTAATGGTAGACAAAAGTATGACTTGGGTGATGATGATCGGAGATGGTCCGACTAAAACTAAGATTACAGCCGGCAAGAACTACGTCGATGGAACACCCACCTTCAAAACCGCTACTGTTTCTGTGATTGGAAGCAACTTCATTGCGAAGGACATCGGGTTCGAGAACTCTGCCGGAGCAGCAAAGCATCAGGCGGTGGCACTTCGAGTTCAATCCGACATGTCAGTCTTCTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTACACACACGCTCACCGTCAATTCTACCGAGACTGCACCATCACCGGAACCATCGATTTCATCTTCGGAAACGGCGCCGTTGTATTCCAAAACTGCAAGATCCTAGTGAGGAAGCCAATGGATAATCAACAATGCATCGTCACCGCGCAGGGCCGAACTCAACGGAAAGAGCCAACCGCCATAATCTTGCAAAATTGTGCCATTTCCTCAGCCCCTGACTTCTTCCCGATCCGCCACATCAACAAGGCTTTCCTGGGCCGGCCATGGAAGCAATATTCAAGAACAATCATAATGCAATCCCAAATTGATGACTTGATTCAACCTGAAGGGTGGCTTCCATGGACGGGAAATTTTGCTCTGAATACTCTGTTTTATGCAGAGATCAATAACAGGGGACCGGGAGCAGCTACGGATAAACGTGTGAAGTGGAAGGGAATTAAGAAGATCACTCCGGAACACGCCTTAGATTTCACTGCTGCGAGATTTATTCGTGGAGATCCCTGGATCAAGCCCACCGGCGTTCCGTATACTTCCGGCATGATGGCACATAAGAAAACAAATAACAAAAGTATATATATAAAAGAAAAGACATCAATATCTACATGTCACAATCTCCGTTCCATAAGGAATACAAACTAA 1800 47.28 MSDQGKNKKAALIGVSSLFLVAMVVAVAVGVNRNNPTTSGGGDSAATAEISTSTKAVKALCQPTDYQETCEKALSEAGTNTSDPRELIKAGFNVAVNEIKWAIGNSTTLKEAASDPMAKQALDACGELMDYAIDDLVISFERITDNFDMQKLDDYIEDLKVWLSGALTYQETCIDGFENVTGDTGEKMTKLLETSKELTINGLGMVSEVTSIMTSFGLPAAGRRLMTAESNEQSEEPSWVSDRRGLLQATGANIKADVVVAKDGSGKYKTVSAALNDVPKKSNKTFVIYVKAGVYQEQVMVDKSMTWVMMIGDGPTKTKITAGKNYVDGTPTFKTATVSVIGSNFIAKDIGFENSAGAAKHQAVALRVQSDMSVFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNGAVVFQNCKILVRKPMDNQQCIVTAQGRTQRKEPTAIILQNCAISSAPDFFPIRHINKAFLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWTGNFALNTLFYAEINNRGPGAATDKRVKWKGIKKITPEHALDFTAARFIRGDPWIKPTGVPYTSGMMAHKKTNNKSIYIKEKTSISTCHNLRSIRNTN* 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4926168 4930318 - Chy6G112520.1 Chy06g00724 228433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00724 599 PANTHER PECTINESTERASE 12 570 - -
Chy06g00724 599 Coils Coil 599 599 - -
Chy06g00724 599 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Chy06g00724 599 Gene3D - 251 567 IPR012334 -
Chy06g00724 599 PANTHER PECTINESTERASE 12 570 - -
Chy06g00724 599 SUPERFAMILY Pectin lyase-like 254 566 IPR011050 -
Chy06g00724 599 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 204 IPR006501 GO:0004857
Chy06g00724 599 Pfam Plant invertase/pectin methylesterase inhibitor 56 203 IPR006501 GO:0004857
Chy06g00724 599 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 209 IPR035513 -
Chy06g00724 599 Pfam Pectinesterase 257 553 IPR000070 GO:0030599|GO:0042545
Chy06g00724 599 SMART PMEI_2 52 205 IPR006501 GO:0004857
Chy06g00724 599 CDD PMEI-like_3 59 211 - -
Chy06g00724 599 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 209 IPR035513 -
Chy06g00724 599 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00724 Chy11g01528 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00724 Chy-Chr6:4926168 Chy09g00436 Chy-Chr9:3871581 1.79E-165 dispersed
Chy09g00718 Chy-Chr9:9618202 Chy06g00724 Chy-Chr6:4926168 1.81E-10 transposed
Chy11g01528 Chy-Chr11:21877871 Chy06g00724 Chy-Chr6:4926168 0 wgd
Chy06g00724 Chy-Chr6:4926168 Chy08g01044 Chy-Chr8:17539007 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00724 K01051 - csv:101212686 1096.65