Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00728 ATGAAGCTAATTTCATCACTTTCATTATTCTCTTCTCTTCTGGCCATTACTTTATCTGCCGCCGATGGGTTTGATATAGCTCTTCCGCCGTCGTACCCGGCGGAGCCCCCCGTGGGAGATCCTTGGAGTGGATTGCGTGTTTTTGATGTAAATGATTATGGGGCAGTTGCTGATGGGAAGACGAACGACAGCTTGGCATTGATGGCGGCGTGGGAAGATGCATGTTATCACGAAGGAGGGTCGATGCTGTTAATACCGGAGGGGAATTACTTCGTTGGCCAAATTACATTTTCAGGGCCATGTTTCAATGACCTCTCTCCCAAAGTCCTCATTTTAGGCACTTTGATTGCTCCCACCAGTCTCACCGCCGACGTTTGGATCCACTTCGATTCCCTCCGCCGCCTCTCCCTCACTGCCGGCCACTTATCCACCCTCGACGGTCGGGGCGCCCAAACCTGGTCCTCCGGTTCCGCTTGTCGTCATGCAATGACTTGTGCTATGTTTGCCATTTCTTTGAAGCTAAGCAATGTGTTGAATGGGACAGTGAGTAATATAAACCTAGTGGACAGCAAGGCGTTTCATGTCTCCATCCATCAGTGTGACAATATTCATCTTTCTGGATTCAATATCACAGCTCCTTGGTATAGTCAAAACACTGATGGCATCCATATCAGCCAATCTACCAACATCAGCATCACAAACTCAAAAATCGGTGTTGGTGATGATTGTATTTCCATTGGACCTGGTAGCGTCAACGTGTTGGTTTCTAATGTTACATGTGGCCCAGGACATGGAATCAGTATCGGGAGCTTAGGGAGGTACAAAATGGAGAATGATGTGAGAGGAATAAGGGTGGAGAATTGTACCATAAGTGGGACTCAAAATGGAGTGAGGGTAAAAACATGGCCAGGAGATCGTGCTAGCAATGCTACCAATTTGACATTTCAAAACATTGTGATGATCAATGTCTCAAATCCCATTATCATAGATCAACAATATTGTCCTACCCATTCTTGTGACTCACGAGAGTCATCAAGTGTGAAGCTGAGTGATATCAACATAAGAAATATAAGTGGAACTTACAACTCTGAGTTTGCAATTAACATGAAATGCAGCTCAACCAAGCCATGGAGTCAAGGTCGGTAA 1146 45.81 MKLISSLSLFSSLLAITLSAADGFDIALPPSYPAEPPVGDPWSGLRVFDVNDYGAVADGKTNDSLALMAAWEDACYHEGGSMLLIPEGNYFVGQITFSGPCFNDLSPKVLILGTLIAPTSLTADVWIHFDSLRRLSLTAGHLSTLDGRGAQTWSSGSACRHAMTCAMFAISLKLSNVLNGTVSNINLVDSKAFHVSIHQCDNIHLSGFNITAPWYSQNTDGIHISQSTNISITNSKIGVGDDCISIGPGSVNVLVSNVTCGPGHGISIGSLGRYKMENDVRGIRVENCTISGTQNGVRVKTWPGDRASNATNLTFQNIVMINVSNPIIIDQQYCPTHSCDSRESSSVKLSDINIRNISGTYNSEFAINMKCSSTKPWSQGR* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4955719 4959759 + Chy6G112560.1 Chy06g00728 228437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00728 381 ProSitePatterns Polygalacturonase active site. 257 270 IPR000743 GO:0004650|GO:0005975
Chy06g00728 381 Gene3D - 43 379 IPR012334 -
Chy06g00728 381 PANTHER - 36 376 - -
Chy06g00728 381 SMART pbh1 250 270 IPR006626 -
Chy06g00728 381 SMART pbh1 280 301 IPR006626 -
Chy06g00728 381 SMART pbh1 200 226 IPR006626 -
Chy06g00728 381 SMART pbh1 310 331 IPR006626 -
Chy06g00728 381 SMART pbh1 227 248 IPR006626 -
Chy06g00728 381 SMART pbh1 344 371 IPR006626 -
Chy06g00728 381 Pfam Glycosyl hydrolases family 28 75 376 IPR000743 GO:0004650|GO:0005975
Chy06g00728 381 SUPERFAMILY Pectin lyase-like 43 377 IPR011050 -
Chy06g00728 381 PANTHER EXOPOLYGALACTURONASE-LIKE 36 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00728 K01213 E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] - csv:101213162 709.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00728 Chy-Chr6:4955719 Chy09g00116 Chy-Chr9:954686 1.91E-98 dispersed
Chy06g00727 Chy-Chr6:4952032 Chy06g00728 Chy-Chr6:4955719 3.91E-93 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g149 . . . . . Bpe14g01113 . . . . Cma06g01540 Cma14g01608 . Car14g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01644 . . . . . . . . . . . . . Cla05g00673 . . Cco05g0746 . . . . . Chy06g00728 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013780 0 1 0 0 0 1 2 1 1 1 0 1 1 1 0 2 1 0 1 1 0 1 1 1 1 1 2 0 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00728 Chy_Chr06 FPKM 18.375309 18.949604 12.540466 12.613891 8.703985 8.064713 8.453961 10.162806 11.45869 9.590387