Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00756 ATGGTTTCCAGTAATCGAGCAACTCATTCGCATCAACAACAAGCGCAGTCTTCGAACACGAATACCAGCAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCTATAGCGCAGTATACAGTTGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGAAAATCTTTTGACTACTCACAATCTATAAAAACTTCGACTCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGGGGTGGTCATATCCAGCCCTTTGGATGTATGATAGCTATTGAAGAGGCTAGTTTTCGAGTTATTGCATACAGTGAAAACGCTAGGGAATTGCTCGGTCTGACGCCTCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTTACAATTGGGACTGATGTACGCAACTTGTTCACTTCCAATAGTGCAATTCTACTAGAGAAAGCGTTTGGGGCTCGAGAAATCACTTTGTTGAACCCAGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTCTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCTCTTTCTATTGCTGGAGCAGTACAATCGCAGAAGCTTGCGGTACGTGCAATTTCTCAGTTACAAGCACTCCCTGGCGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGAGTTATGGTGTATAAGTTTCACGAGGATGAGCATGGTGAGGTTGTAGCTGAAAGTAAGAGGCCTGACTTAGAGCCATATATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGCGTTAGGATGATTGTTGATTGCCACGCCTCTCCAGTTCGTGTAATTCAGGATGCAGGGCTTATGCAACATCTCTGCTTGGTGGGTTCAACTCTTCGTGCTCCCCATGGTTGCCATGCCCAGTATATGGCCAATATGGGCTCTATTGCTTCGTTAGCAATGGCAGTTGTTATCAATGGTAATGATGATGAAGCTATTGGTGGACGAAACTCAACAAGGCTTTGGGGTTTGATTGTATGTCATCATACTTCTGCTCGGTGCATTCCGTTCCCACTCCGGTATGCGTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCCTCACAGTTGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTACTCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGCGAAATATTACCCTCTGGGTGTGACGCCAACTGAGGCCCAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGGGCAGCCTTGCTGGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACAAAAAAGGATTTTCTATTTTGGTTCCGATCTCATACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCGGAGGATAAGGATGATGGTCAAAGAATGCATCCGCGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTACGAGATTCATTTAAGAACGATGTGGCAATCAATTCAAAGGCAGTTGTGCACCCTCATCTAGGGGATCTTGACTTGCAGGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGCTGATGGTCGTATAAATGGATGGAATGCTAAGATAGCTGAGTTGACTGGGCTTGCGGTTGAGGAGGCTATGGGGAAATCCTTGGTTCGTGATCTTGTGTACAAAGAGTCTGAAGAAACAGTTGACAGACTTGTTTCCCGTGCTTTAAAAGGTGAAGAAGATAAAAATGTAGAGATAAAAATGAGGACATTTGGGCCAGAAGAAGATCAAAGGACGCCATTTTTTGTTGTCGTAAATGCTTGCTCTAGCAGGGACTACACTGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTGTAAGCATACAAGGTGATTATAAAGCAATTATTCATAGCCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCGGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGAGAGGTCATAATTGGAAAAATGCTAGTAGGAGAGGTTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCCTGCACAGTGCAATTGGAGGGCAGGATAATGAAAAATACCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCTTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCAAGTCCAGAATTGCAACAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTCCTTGAGACCAGTCTTGCTTGTGAAAAACAAATGCTAAAGATTATTGAGGATATGGACTTGGAATGTATTGATGATGGTACGATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGATACTACTCAGAGAAAGAAACTTACAACTGATTCGTGATATACCAGAAGAAGTAAAGACCATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCCGATTTCTTGTTGAATATGGTCCGTTATGCACCCTCTCCGGAAGGCTGGGTAGAAATACGTGTCTGTCCATTACTGAAGCAAAACTCAGATGGAATTACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTAGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTACAATACATCAGGGAATCTGAAAGATGCTATTTCTTGATTACTCTCGAACTCCCCTTGACAGAGAGAGGCCTAAACGATGTCGGGTATGTAGTAAAATGGCATTGGCAAGATAAGAGTATGGCCAAACTTACATTTAGGAATGGAGCATTGGCTCTTGTTGTGGCATTGTTGGTTGTGGGATTGGCTGAAAGCCGAAAGTTAGAGAAGGAGACGCTTGGTGGAGGTTTAGGAGGCGGAGGTGGTTTAGGAGGTGGTGGTGGATTAGGGGGCGGAGGTGGTTTAGGCGGCGGTGGTGGATTAGGGGGCGGTGGTGGTTTAGGCGGCGGTGGTGGATTAGGGGGCGGTGGTGGTTTAGGGGGCGGTGGTGGATTAGGGGGTGGAGGTGGTTTAGGGGGCGGAGGTGGTTTAGGAGGTGGAGGTGGATTAGGAGGCGGAGCTGGTGGAGGATTTGGAGGTGGTAAGGGAGGTGGATTTGGAGGCGGAGTAGGAGGTGGAGCTGGTGGTGGAGGTGGAGCTGGTGGAGGAGCTGGTGGTGGATTTGGAGGTGGCAAGGGAGGTGGATTTGGAGGAGGAGTAGGAGGTGGTGGTGGAGCAGGAGGTGGCCATGGAGGCGGAGCAGGAGGTGGTTTTGGAGGAGGCAAAGGAGGTGGATTCGGAGGCGGAGCTGGTGGTGGTTTTGGAGGTGGAGCAGGTGGAGGAGGAGGCTTTGGTGGTGGCAAAGTCTAA 4038 45.64 MVSSNRATHSHQQQAQSSNTNTSNLRSHRTDSISKAIAQYTVDARLHAVFEQSGESGKSFDYSQSIKTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIEEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSTRLWGLIVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALYYQAKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKNDVAINSKAVVHPHLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEETVDRLVSRALKGEEDKNVEIKMRTFGPEEDQRTPFFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFVSIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREVIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSLACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPLLKQNSDGITLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDVGYVVKWHWQDKSMAKLTFRNGALALVVALLVVGLAESRKLEKETLGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGAGGGFGGGKGGGFGGGVGGGAGGGGGAGGGAGGGFGGGKGGGFGGGVGGGGGAGGGHGGGAGGGFGGGKGGGFGGGAGGGFGGGAGGGGGFGGGKV* 1346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5211189 5219961 + Chy6G112840.1 Chy06g00756 228465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00756 1345 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Chy06g00756 1345 SMART HisKA_10 898 962 IPR003661 GO:0000155|GO:0007165
Chy06g00756 1345 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1010 1122 IPR003594 -
Chy06g00756 1345 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Chy06g00756 1345 PANTHER PHYTOCHROME 7 1126 - -
Chy06g00756 1345 CDD PAS 768 876 IPR000014 -
Chy06g00756 1345 Gene3D PAS domain 84 332 - -
Chy06g00756 1345 Gene3D - 961 1127 IPR036890 -
Chy06g00756 1345 PANTHER TWO-COMPONENT HISTIDINE KINASE 7 1126 - -
Chy06g00756 1345 Pfam PAS fold 757 876 IPR013767 GO:0006355
Chy06g00756 1345 Pfam PAS fold 625 741 IPR013767 GO:0006355
Chy06g00756 1345 Gene3D - 210 568 IPR029016 -
Chy06g00756 1345 Pfam PAS fold 80 196 IPR013654 GO:0006355
Chy06g00756 1345 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Chy06g00756 1345 SMART pas_2 624 691 IPR000014 -
Chy06g00756 1345 SMART pas_2 756 826 IPR000014 -
Chy06g00756 1345 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Chy06g00756 1345 Gene3D - 879 960 - -
Chy06g00756 1345 SUPERFAMILY GAF domain-like 209 404 - -
Chy06g00756 1345 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 875 IPR035965 -
Chy06g00756 1345 CDD HisKA 898 954 IPR003661 GO:0000155|GO:0007165
Chy06g00756 1345 Gene3D PAS domain 620 745 - -
Chy06g00756 1345 TIGRFAM sensory_box: PAS domain S-box protein 629 743 IPR000014 -
Chy06g00756 1345 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Chy06g00756 1345 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 973 1122 IPR036890 -
Chy06g00756 1345 CDD PAS 633 741 IPR000014 -
Chy06g00756 1345 ProSiteProfiles PAS repeat profile. 757 809 IPR000014 -
Chy06g00756 1345 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 739 759 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 719 736 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 SUPERFAMILY GAF domain-like 415 592 - -
Chy06g00756 1345 CDD HATPase_Phy-like 1009 1121 IPR044767 -
Chy06g00756 1345 ProSiteProfiles Histidine kinase domain profile. 905 1125 IPR005467 -
Chy06g00756 1345 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 886 954 IPR036097 GO:0000155|GO:0007165
Chy06g00756 1345 SMART gaf_1 229 417 IPR003018 GO:0005515
Chy06g00756 1345 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 737 IPR035965 -
Chy06g00756 1345 Gene3D PAS domain 770 878 - -
Chy06g00756 1345 Pfam His Kinase A (phospho-acceptor) domain 902 962 IPR003661 GO:0000155|GO:0007165
Chy06g00756 1345 Pfam GAF domain 229 407 IPR003018 GO:0005515
Chy06g00756 1345 Gene3D - 412 585 IPR043150 -
Chy06g00756 1345 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00756 K12121 PHYB; phytochrome B - csv:101212197 2241.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00528 Chy-Chr1:3757593 Chy06g00756 Chy-Chr6:5211189 6.49E-35 dispersed
Chy03g00986 Chy-Chr3:13388886 Chy06g00756 Chy-Chr6:5211189 0 dispersed
Chy03g00990 Chy-Chr3:13429003 Chy06g00756 Chy-Chr6:5211189 0 dispersed
Chy06g00756 Chy-Chr6:5211189 Chy12g00013 Chy-Chr12:176102 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g02240 . 5 1196 Histidine Kinase Gene Family AT2G17820 65.3 0.0e+00 1457.2
Chy10g00085 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1350.9
Chy11g01787 . 58 1002 Histidine Kinase Gene Family AT2G01830 53.3 2.9e-274 941.8
Chy11g00704 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.1 2.2e-269 925.6
Chy07g00300 . 1 995 Histidine Kinase Gene Family AT5G10720 57.3 3.3e-290 994.6
Chy03g00986 . 35 1154 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1822.4
Chy03g00990 . 3 1144 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1617.4
Chy06g00756 . 34 1121 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1192.9
Chy01g00529 . 18 952 Histidine Kinase Gene Family AT1G09570 57.0 0.0e+00 1082.8
Chy06g00756 . 13 1062 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1665.6
Chy12g00013 . 21 1043 Histidine Kinase Gene Family AT2G18790 59.6 0.0e+00 1239.9
Chy03g00986 . 55 1088 Histidine Kinase Gene Family AT2G18790 53.2 0.0e+00 1085.9
Chy03g00990 . 22 1077 Histidine Kinase Gene Family AT2G18790 50.9 1.8e-306 1048.9
Chy01g00529 . 26 952 Histidine Kinase Gene Family AT2G18790 56.0 8.2e-299 1023.5
Chy01g00529 . 18 954 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1223.8
Chy06g00756 . 21 1123 Histidine Kinase Gene Family AT5G35840 53.1 0.0e+00 1150.2
Chy03g00986 . 43 1148 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1114.4
Chy01g00528 . 1 160 Histidine Kinase Gene Family AT5G35840 52.4 9.3e-37 152.9
Chy06g00756 . 3 1123 Histidine Kinase Gene Family AT4G16250 75.9 0.0e+00 1712.2
Chy12g00013 . 22 1105 Histidine Kinase Gene Family AT4G16250 57.7 0.0e+00 1283.5
Chy03g00986 . 42 1149 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1137.9
Chy01g00529 . 26 952 Histidine Kinase Gene Family AT4G16250 54.4 1.2e-292 1003.0
Chy12g00013 . 31 1119 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1375.5
Chy06g00756 . 38 1121 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1271.5
Chy01g00529 . 27 952 Histidine Kinase Gene Family AT4G18130 50.1 3.2e-255 878.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00756 Chy_Chr06 FPKM 97.238739 110.386147 110.349846 106.494812 68.693672 70.898331 68.71347 44.469307 51.057209 49.719429