Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00756 ATGGTTTCCAGTAATCGAGCAACTCATTCGCATCAACAACAAGCGCAGTCTTCGAACACGAATACCAGCAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCTATAGCGCAGTATACAGTTGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGAAAATCTTTTGACTACTCACAATCTATAAAAACTTCGACTCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGGGGTGGTCATATCCAGCCCTTTGGATGTATGATAGCTATTGAAGAGGCTAGTTTTCGAGTTATTGCATACAGTGAAAACGCTAGGGAATTGCTCGGTCTGACGCCTCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTTACAATTGGGACTGATGTACGCAACTTGTTCACTTCCAATAGTGCAATTCTACTAGAGAAAGCGTTTGGGGCTCGAGAAATCACTTTGTTGAACCCAGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTCTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCTCTTTCTATTGCTGGAGCAGTACAATCGCAGAAGCTTGCGGTACGTGCAATTTCTCAGTTACAAGCACTCCCTGGCGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGAGTTATGGTGTATAAGTTTCACGAGGATGAGCATGGTGAGGTTGTAGCTGAAAGTAAGAGGCCTGACTTAGAGCCATATATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGCGTTAGGATGATTGTTGATTGCCACGCCTCTCCAGTTCGTGTAATTCAGGATGCAGGGCTTATGCAACATCTCTGCTTGGTGGGTTCAACTCTTCGTGCTCCCCATGGTTGCCATGCCCAGTATATGGCCAATATGGGCTCTATTGCTTCGTTAGCAATGGCAGTTGTTATCAATGGTAATGATGATGAAGCTATTGGTGGACGAAACTCAACAAGGCTTTGGGGTTTGATTGTATGTCATCATACTTCTGCTCGGTGCATTCCGTTCCCACTCCGGTATGCGTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCCTCACAGTTGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTACTCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGCGAAATATTACCCTCTGGGTGTGACGCCAACTGAGGCCCAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGGGCAGCCTTGCTGGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACAAAAAAGGATTTTCTATTTTGGTTCCGATCTCATACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCGGAGGATAAGGATGATGGTCAAAGAATGCATCCGCGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTACGAGATTCATTTAAGAACGATGTGGCAATCAATTCAAAGGCAGTTGTGCACCCTCATCTAGGGGATCTTGACTTGCAGGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGCTGATGGTCGTATAAATGGATGGAATGCTAAGATAGCTGAGTTGACTGGGCTTGCGGTTGAGGAGGCTATGGGGAAATCCTTGGTTCGTGATCTTGTGTACAAAGAGTCTGAAGAAACAGTTGACAGACTTGTTTCCCGTGCTTTAAAAGGTGAAGAAGATAAAAATGTAGAGATAAAAATGAGGACATTTGGGCCAGAAGAAGATCAAAGGACGCCATTTTTTGTTGTCGTAAATGCTTGCTCTAGCAGGGACTACACTGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTGTAAGCATACAAGGTGATTATAAAGCAATTATTCATAGCCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCGGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGAGAGGTCATAATTGGAAAAATGCTAGTAGGAGAGGTTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCCTGCACAGTGCAATTGGAGGGCAGGATAATGAAAAATACCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCTTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCAAGTCCAGAATTGCAACAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTCCTTGAGACCAGTCTTGCTTGTGAAAAACAAATGCTAAAGATTATTGAGGATATGGACTTGGAATGTATTGATGATGGTACGATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGATACTACTCAGAGAAAGAAACTTACAACTGATTCGTGATATACCAGAAGAAGTAAAGACCATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCCGATTTCTTGTTGAATATGGTCCGTTATGCACCCTCTCCGGAAGGCTGGGTAGAAATACGTGTCTGTCCATTACTGAAGCAAAACTCAGATGGAATTACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTAGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTACAATACATCAGGGAATCTGAAAGATGCTATTTCTTGATTACTCTCGAACTCCCCTTGACAGAGAGAGGCCTAAACGATGTCGGGTATGTAGTAAAATGGCATTGGCAAGATAAGAGTATGGCCAAACTTACATTTAGGAATGGAGCATTGGCTCTTGTTGTGGCATTGTTGGTTGTGGGATTGGCTGAAAGCCGAAAGTTAGAGAAGGAGACGCTTGGTGGAGGTTTAGGAGGCGGAGGTGGTTTAGGAGGTGGTGGTGGATTAGGGGGCGGAGGTGGTTTAGGCGGCGGTGGTGGATTAGGGGGCGGTGGTGGTTTAGGCGGCGGTGGTGGATTAGGGGGCGGTGGTGGTTTAGGGGGCGGTGGTGGATTAGGGGGTGGAGGTGGTTTAGGGGGCGGAGGTGGTTTAGGAGGTGGAGGTGGATTAGGAGGCGGAGCTGGTGGAGGATTTGGAGGTGGTAAGGGAGGTGGATTTGGAGGCGGAGTAGGAGGTGGAGCTGGTGGTGGAGGTGGAGCTGGTGGAGGAGCTGGTGGTGGATTTGGAGGTGGCAAGGGAGGTGGATTTGGAGGAGGAGTAGGAGGTGGTGGTGGAGCAGGAGGTGGCCATGGAGGCGGAGCAGGAGGTGGTTTTGGAGGAGGCAAAGGAGGTGGATTCGGAGGCGGAGCTGGTGGTGGTTTTGGAGGTGGAGCAGGTGGAGGAGGAGGCTTTGGTGGTGGCAAAGTCTAA 4038 45.64 MVSSNRATHSHQQQAQSSNTNTSNLRSHRTDSISKAIAQYTVDARLHAVFEQSGESGKSFDYSQSIKTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIEEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSTRLWGLIVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALYYQAKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKNDVAINSKAVVHPHLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEETVDRLVSRALKGEEDKNVEIKMRTFGPEEDQRTPFFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFVSIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREVIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSLACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPLLKQNSDGITLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDVGYVVKWHWQDKSMAKLTFRNGALALVVALLVVGLAESRKLEKETLGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGAGGGFGGGKGGGFGGGVGGGAGGGGGAGGGAGGGFGGGKGGGFGGGVGGGGGAGGGHGGGAGGGFGGGKGGGFGGGAGGGFGGGAGGGGGFGGGKV* 1346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5211189 5219961 + Chy6G112840.1 Chy06g00756 228465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00756 1345 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Chy06g00756 1345 SMART HisKA_10 898 962 IPR003661 GO:0000155|GO:0007165
Chy06g00756 1345 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1010 1122 IPR003594 -
Chy06g00756 1345 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Chy06g00756 1345 PANTHER PHYTOCHROME 7 1126 - -
Chy06g00756 1345 CDD PAS 768 876 IPR000014 -
Chy06g00756 1345 Gene3D PAS domain 84 332 - -
Chy06g00756 1345 Gene3D - 961 1127 IPR036890 -
Chy06g00756 1345 PANTHER TWO-COMPONENT HISTIDINE KINASE 7 1126 - -
Chy06g00756 1345 Pfam PAS fold 757 876 IPR013767 GO:0006355
Chy06g00756 1345 Pfam PAS fold 625 741 IPR013767 GO:0006355
Chy06g00756 1345 Gene3D - 210 568 IPR029016 -
Chy06g00756 1345 Pfam PAS fold 80 196 IPR013654 GO:0006355
Chy06g00756 1345 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Chy06g00756 1345 SMART pas_2 624 691 IPR000014 -
Chy06g00756 1345 SMART pas_2 756 826 IPR000014 -
Chy06g00756 1345 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Chy06g00756 1345 Gene3D - 879 960 - -
Chy06g00756 1345 SUPERFAMILY GAF domain-like 209 404 - -
Chy06g00756 1345 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 875 IPR035965 -
Chy06g00756 1345 CDD HisKA 898 954 IPR003661 GO:0000155|GO:0007165
Chy06g00756 1345 Gene3D PAS domain 620 745 - -
Chy06g00756 1345 TIGRFAM sensory_box: PAS domain S-box protein 629 743 IPR000014 -
Chy06g00756 1345 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Chy06g00756 1345 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 973 1122 IPR036890 -
Chy06g00756 1345 CDD PAS 633 741 IPR000014 -
Chy06g00756 1345 ProSiteProfiles PAS repeat profile. 757 809 IPR000014 -
Chy06g00756 1345 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 739 759 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 PRINTS Phytochrome signature 719 736 IPR001294 GO:0006355|GO:0009584
Chy06g00756 1345 SUPERFAMILY GAF domain-like 415 592 - -
Chy06g00756 1345 CDD HATPase_Phy-like 1009 1121 IPR044767 -
Chy06g00756 1345 ProSiteProfiles Histidine kinase domain profile. 905 1125 IPR005467 -
Chy06g00756 1345 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 886 954 IPR036097 GO:0000155|GO:0007165
Chy06g00756 1345 SMART gaf_1 229 417 IPR003018 GO:0005515
Chy06g00756 1345 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 737 IPR035965 -
Chy06g00756 1345 Gene3D PAS domain 770 878 - -
Chy06g00756 1345 Pfam His Kinase A (phospho-acceptor) domain 902 962 IPR003661 GO:0000155|GO:0007165
Chy06g00756 1345 Pfam GAF domain 229 407 IPR003018 GO:0005515
Chy06g00756 1345 Gene3D - 412 585 IPR043150 -
Chy06g00756 1345 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00528 Chy-Chr1:3757593 Chy06g00756 Chy-Chr6:5211189 6.49E-35 dispersed
Chy03g00986 Chy-Chr3:13388886 Chy06g00756 Chy-Chr6:5211189 0 dispersed
Chy03g00990 Chy-Chr3:13429003 Chy06g00756 Chy-Chr6:5211189 0 dispersed
Chy06g00756 Chy-Chr6:5211189 Chy12g00013 Chy-Chr12:176102 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00756 K12121 - csv:101212197 2241.46