Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00758 ATGGATATGGTGTTTGTTAACAAAAACACTGTTTTGGGTATCCTATGTTTTACTCTATTTACCTTGTTTGGAACTTGTTTCTCTAGAGCTTTTACAGCTAATTTTGTGTTTGGGGATTCATTGGTAGAGGTTGGAAACAACAACTACATTCCATCACTCTCCCGGGCCAACTATGTCCCAAATGGTCAGGAGCTTGGGTTCAAGACATTCACTCCCCCATACATGGCACCTTCCACGACTGGACCGGTGATTCTTCGAGGCATCAACTATGCTTCTGGTTCAGCTGGAATCTTAAACAACACAGGAAAAATCTTTATTGCTCGAATCAACATGGATGCACAAATTGATAACTTCGCAAATACCAGACAAGATATCATCACCATGATTGGCCTTCCTTCTGCCATTGATTTGCTTAGAACCTCCATTTTCTCCATAACCATTGGTTCAAATGACTTTATTAATAACTACTTTACACCAGTCCTCTCTGATTCAGGACACCGGTTGATTCCTCCAGAGTTGTTTGTTGGCTCCATGATTTCGAGATACAGACTCCAACTTACAAGACTCTACAATCTAGGAGCTAGAAGGATTGTAGTGGTAAACGTCGGACCAATCGGATGCATTCCTTATCAGAGAGATTCAAATCCTTCGTTAGGAAACAACTGCGCAAATTCCCCTAACCTAATGGCTCAGTTATTCAACAGCCAATTAAGAGGTCTAATCACAGAGCTCGGATCACGATTTCAAGATGCGAATTTCCTTTACGCAGATGCATTTCACATCGTTCAAGATATTGTTCAGAATCACGCATCATACGGGTTTGAGAATGCTGACACGGCGTGCTGCCATATCGCGGGACGGTACGGTGGTCTTTTTCCCTGTGGACCTCCGTCGAACGTGTGTGTGGACAGGTCGAAGTACGTGTTTTGGGATTCATTTCATCCTTCTGAAGCTGCGAACTCCATCATCGCCGGGCGGCTCTTGAACGGCGACGCCGTTGATATCTGGCCTATCAATATTAGAGAACTTGAACGTCTTAATTAA 1044 43.49 MDMVFVNKNTVLGILCFTLFTLFGTCFSRAFTANFVFGDSLVEVGNNNYIPSLSRANYVPNGQELGFKTFTPPYMAPSTTGPVILRGINYASGSAGILNNTGKIFIARINMDAQIDNFANTRQDIITMIGLPSAIDLLRTSIFSITIGSNDFINNYFTPVLSDSGHRLIPPELFVGSMISRYRLQLTRLYNLGARRIVVVNVGPIGCIPYQRDSNPSLGNNCANSPNLMAQLFNSQLRGLITELGSRFQDANFLYADAFHIVQDIVQNHASYGFENADTACCHIAGRYGGLFPCGPPSNVCVDRSKYVFWDSFHPSEAANSIIAGRLLNGDAVDIWPINIRELERLN* 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5226589 5228124 + Chy6G112860.1 Chy06g00758 228467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00758 347 Gene3D SGNH hydrolase 27 330 IPR036514 -
Chy06g00758 347 CDD SGNH_plant_lipase_like 32 331 IPR035669 -
Chy06g00758 347 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE SUPERFAMILY PROTEIN 18 344 - -
Chy06g00758 347 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 18 344 - -
Chy06g00758 347 Pfam GDSL-like Lipase/Acylhydrolase 35 324 IPR001087 GO:0016788
Chy06g00758 347 SUPERFAMILY SGNH hydrolase 88 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00758 - - - csv:101216051 667.537
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00758 Chy-Chr6:5226589 Chy11g00136 Chy-Chr11:1448723 1.11E-103 dispersed
Chy06g00758 Chy-Chr6:5226589 Chy02g00196 Chy-Chr2:1339153 5.89E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g58 . . . . . . . . . . . Cma14g01587 . Car14g01397 . . Cpe03g01324 Bhi01g01094 . . . . . Lcy11g1334 . . . . . . . . . . Cone4ag0103 . . . Cme06g00793 . Blo07g00140 . . . Bpe13g00700 . Bma06g01464 . . Cmo14g01617 . . . . . . . . . . . . . Cla05g00710 . . Cco05g0778 Clacu05g0767 Cmu05g0733 Cre05g0807 . Csa03g01522 Chy06g00758 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014157 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 0 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00758 Chy_Chr06 FPKM 2.530516 2.400424 1.872332 3.938622 4.4582 5.514919 4.987385 2.29997 2.723869 3.035146