Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00829 ATGGAGAAGGAATTCTTCATGAATGATGGTGGATGCAGTTTTTATGGGATGGAAATCCAACCTAATGAGCTGAATTCAAGTGGGGTGTTGTTGAATCCCAATTGGGAAAATTCGATGGATCATAGCGATCTCTTTGAGTCTACTTTAAGTTCGATTGTGTCTTCTCCGGCGAATTCTCACATTATCGGTGGTGGCGGTGGCGGTGGAGATAACATGATGATGCGAGAATTGATTGGAAGGCTGGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAATAACAATAGTACGAACACTTCTTGTTACAATACGCCTTTGAATTCTCCTCCCAAGCTTAATTTATCCTCGATCATGGAGTCTCAGATCAGAGGGAATTTGATTCCCCATCGCCAAAATCTTGCCCCATTTTCGACTGATCCTGGTTTTGCTGAGAGGGCTGCGAGATTTTCTTGTTTTGGGAACAGGAATCTTGGGGGATTGAATGGGCAATTGGGGTCTAATGAAACTCAAGAATTGAGTAACAGATCAATGGCTGGAGCTGGAGTGGAATCTGGAAAGTTATCCAGAGTTTCAAGTAACAAATCCTTTAACATTGGTGGAATTGGATCCCCTCAAATGGGGGTTCAAGAAGGCGATCAAAGCCCAGTTCAAAAAGGGAATTCAATGCCAATCCCTAACAAGAAAGTATTGAACAGGTTTTCGAGGTCTTCGACTCCCGAAAATGCTGGTGATTCGCGGGAGGGATCTTCGGTTTCAGAGCAGATTCCAGTTGGGGAATTGGGTTTAAAAGGTAAAGTTGAAACCAACACTAGGAAAAGGAAATCAGTTCAAACTGGTCAAGCAAAAGATGTGAAGGCTGCAGTAGAGAACCATGAATCAAATGGAAAGAAAATCAAACCAGATGAAGTTACTAAGAAAGAGATTGATGGTGCAAAAGGAAAGGCAGAGGCAAAATCTTCAGGAGATGCAAATCAGAAACAAAACAATGATAGTTCAAAGCCTCCTGAGCCTCCAAAGGATTATATCCATGTTAGAGCTAGAAGAGGTCAAGCTACAGATAGCCACAGTTTGGCTGAAAGAGTCCGACGCGAGAAAATCAGCAAACGAATGAAGTTTCTTCAGGATCTTGTTCCCGGTTGCAATAAGGTTACTGGAAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAGTCTTTGCAGCGTCAAGTTGAGTTTCTTTCAATGAAATTGGCAACTGTTAATCCAAGGATGGATTTTAACATGGAAACTCTTGTGCCAAAGGATATCTTCAAAGGTCCTGGTTCCTCATCGCATACGGTTTACCCTATGGATTCATCTGTACCCCAATTTGCATATGATTATCAATCTATTCACGTGACTCCTCTTCATACTGGCATTCCTAATGGGACAGAGAAGCAATTCTCAGTTGCCTCAGCAAATGATGTGATGCAAAGAAATCTAAGCGGGCAAATGCCGAACGGGTACAACGAAGTCGTGAATGGAATTCAAATTTCAAAGTTCTGGGAAGATGAACTCCACACAGTAGTTCAAATGGGTTATGGACAAAACCAACTGCAGAATGCTAATGGTAATATAAACAACAGAATTCGTAGCTATTTGGGACATATTAGATCATTAAACTGA 1668 41.61 MEKEFFMNDGGCSFYGMEIQPNELNSSGVLLNPNWENSMDHSDLFESTLSSIVSSPANSHIIGGGGGGGDNMMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQIRGNLIPHRQNLAPFSTDPGFAERAARFSCFGNRNLGGLNGQLGSNETQELSNRSMAGAGVESGKLSRVSSNKSFNIGGIGSPQMGVQEGDQSPVQKGNSMPIPNKKVLNRFSRSSTPENAGDSREGSSVSEQIPVGELGLKGKVETNTRKRKSVQTGQAKDVKAAVENHESNGKKIKPDEVTKKEIDGAKGKAEAKSSGDANQKQNNDSSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLVPKDIFKGPGSSSHTVYPMDSSVPQFAYDYQSIHVTPLHTGIPNGTEKQFSVASANDVMQRNLSGQMPNGYNEVVNGIQISKFWEDELHTVVQMGYGQNQLQNANGNINNRIRSYLGHIRSLN* 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5866149 5868358 + Chy6G113570.1 Chy06g00829 228538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00829 555 MobiDBLite consensus disorder prediction 200 348 - -
Chy06g00829 555 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 35 537 IPR024097 GO:0006355
Chy06g00829 555 Pfam Helix-loop-helix DNA-binding domain 361 408 IPR011598 GO:0046983
Chy06g00829 555 MobiDBLite consensus disorder prediction 327 341 - -
Chy06g00829 555 SMART finulus 363 413 IPR011598 GO:0046983
Chy06g00829 555 MobiDBLite consensus disorder prediction 272 323 - -
Chy06g00829 555 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 35 537 - -
Chy06g00829 555 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 427 IPR036638 GO:0046983
Chy06g00829 555 CDD bHLH_AtBPE_like 347 432 - -
Chy06g00829 555 MobiDBLite consensus disorder prediction 237 259 - -
Chy06g00829 555 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 357 407 IPR011598 GO:0046983
Chy06g00829 555 Gene3D - 354 428 IPR036638 GO:0046983
Chy06g00829 555 MobiDBLite consensus disorder prediction 200 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01416 Chy-Chr1:19575646 Chy06g00829 Chy-Chr6:5866149 8.34E-89 dispersed
Chy03g00988 Chy-Chr3:13411240 Chy06g00829 Chy-Chr6:5866149 1.08E-45 dispersed
Chy06g00829 Chy-Chr6:5866149 Chy09g00423 Chy-Chr9:3739941 1.99E-61 dispersed
Chy06g00829 Chy-Chr6:5866149 Chy01g00774 Chy-Chr1:5949888 1.74E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18141 PF00010 HLH 1.20E-05 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00829 - - csv:101211278 1004.2