Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00857 ATGGCTGGTCTTTCAATGGGGACAAGTCTTGGAGTCTTCATTTTCCTTCACTTCTTTCTACTATCTTCTTCTTCAGCCTTTTCCAAGCCTGCCTCTAATGGCATTGATTGGTGGTGCAAAAAAACCACGTACCCTGAAACCTGCAAGTACTTTTTCAACCATGGCACCAAGTCTCCTCCCAAAGATATGACTGACTTCAAGAAAATGGTGATCCAATTTGCCATGGAAAGAGCTCTGAGTGCTGAGAGCCACACTAAAGGTGTCGGTTCCAAGTGTCGAAATGGGAAGGAAAAGGCTGCTTGGGCTGATTGCTTGAAGCTTTACCAAAATACCATCCTTCAGCTTAACCAAACCCTTGATTCCTCTACTAAAAGTACTGAGTTTGATATCCAAACCTGGCTCAGTACTGCCCTAACCAACCTTGAGACCTGCCGCACCGGGTTTGCTGAGCTTAATGTTTCGGACTATATAATGCCACTGATCATGTCAGACAATGTCACTAAGTTAATAAGTAACAGTTTGGCTATTAATAATGCTTCAGCTGGGGTGGGGAATGGGAAGGAGACATACAAAAAAGGATTTCCAAGTTGGCTTTCAGGTGGTGATAGGAGGTTACTGCAGTCATCATCAACAAAGGTGGACCTTGTGGTGGCTCAGGATGGATCCAGTAACTATACGACGGTAGGAGCTGCTCTTGAAGAAGCTGCAAAAAGGAAGACAAGTGGAAGATTTGTTATACAAGTAAAGAGAGGGGTTTACAGAGAAAATCTCGAGATAGGAAGTAAGATGAAGAATATAATGCTCATTGGAGATGGAATGAGATTTACCTTCATTACTGGTAATAGAAGTGTAGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCGCGGCATCACATTCCGAAATACCGCTGGTCCTGAGAACCATCAAGCAGTTGCACTCCGATCTGGCGCAGATCTTTCTGTTTTCTACCGTTGTGCCTTTGAAGGGTATCAAGACACCCTTTATGTTCATTCACAAAGACAATTCTATAAAGAGTGTTATATTTACGGCACCGTAGATTTTATATTTGGCAATGCTGCAGTTGTTCTACAGAACTGCATGATTTATGCAAGGAAGCCAATGAATGGTCAGAAGAACGCAGTCACTGCTCAAGGACGGACAGATCCAAATCAAAATACTGGCATTTCAATCCACAATTCACGAGTCATGGCCACAGATGACCTAAAACCAGTGGAGAGCACAGTGAAAACCTACTTAGGAAGGCCATGGAAGGAGTACTCTCGAACAGTTTTCATGAAAACTTACATTGATAGTTTGGTTGATCCAACAGGTTGGTTGGAGTGGGATGGTGACTTTGCGTTGAATACGTTATATTATGGAGAATATAACAACATTGGTCCTGGGTCACCAATTAGCCAGCGAGTGAGGTGGAAAGGTTACCATGTTATAACCAATTCAACAGAGGCATCAGAGTTCACCGTCCAAAATTTCATTGCAGGGCAGTCGTGGTTGCCAGACACAGAGGTCCCATTCACTCCTGGACTCTAG 1581 43.71 MAGLSMGTSLGVFIFLHFFLLSSSSAFSKPASNGIDWWCKKTTYPETCKYFFNHGTKSPPKDMTDFKKMVIQFAMERALSAESHTKGVGSKCRNGKEKAAWADCLKLYQNTILQLNQTLDSSTKSTEFDIQTWLSTALTNLETCRTGFAELNVSDYIMPLIMSDNVTKLISNSLAINNASAGVGNGKETYKKGFPSWLSGGDRRLLQSSSTKVDLVVAQDGSSNYTTVGAALEEAAKRKTSGRFVIQVKRGVYRENLEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKPVESTVKTYLGRPWKEYSRTVFMKTYIDSLVDPTGWLEWDGDFALNTLYYGEYNNIGPGSPISQRVRWKGYHVITNSTEASEFTVQNFIAGQSWLPDTEVPFTPGL* 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6182906 6184957 - Chy6G113850.1 Chy06g00857 228566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00857 526 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 178 IPR035513 -
Chy06g00857 526 Pfam Plant invertase/pectin methylesterase inhibitor 35 176 IPR006501 GO:0004857
Chy06g00857 526 ProSitePatterns Pectinesterase signature 2. 359 368 IPR033131 -
Chy06g00857 526 Gene3D - 208 526 IPR012334 -
Chy06g00857 526 PANTHER PECTINESTERASE 12 525 - -
Chy06g00857 526 SUPERFAMILY Pectin lyase-like 211 525 IPR011050 -
Chy06g00857 526 CDD PMEI-like_3 37 179 - -
Chy06g00857 526 SMART PMEI_2 30 176 IPR006501 GO:0004857
Chy06g00857 526 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 179 IPR035513 -
Chy06g00857 526 PANTHER PECTINESTERASE 12 525 - -
Chy06g00857 526 Pfam Pectinesterase 214 511 IPR000070 GO:0030599|GO:0042545
Chy06g00857 526 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 178 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00857 Chy09g01018 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00384 Chy-Chr2:2440962 Chy06g00857 Chy-Chr6:6182906 1.07E-153 dispersed
Chy06g00857 Chy-Chr6:6182906 Chy09g01018 Chy-Chr9:12752095 0 dispersed
Chy06g01208 Chy-Chr6:10749051 Chy06g00857 Chy-Chr6:6182906 7.74E-144 dispersed
Chy11g00054 Chy-Chr11:575542 Chy06g00857 Chy-Chr6:6182906 5.94E-93 dispersed
Chy11g00104 Chy-Chr11:1190301 Chy06g00857 Chy-Chr6:6182906 1.45E-123 dispersed
Chy06g00857 Chy-Chr6:6182906 Chy09g00837 Chy-Chr9:11150722 2.12E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00857 K01051 - csv:101211449 1035.4