Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00871 ATGGAGGAGAAAGAAACCGGAGTTTCTAGGTTTACAGTTACAAATGATGAAGCCCTAGACAACTTCGAGTTAGCTCCAAGAACAGAAGCCCTAAAATCAACCAGTGAGTCTAAAGTAACGGAGGTCGCGGTAGCTGCTCCACCACCGGGGTTTGTAGCGGCGACTGATACAGCACCGGTGAGTGTAGCGGTGTCTAGTACTGAAACAAAGAAGAAGAGAGGGAGACCGAGAAAGTACGGACCGGATGGGAAGCGGTCACTGACATTGGCGTTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGACCGGAGAGTTCCCGAATTGGAAACGAGATAACGAGATTTCTCAAGCGATAGTGAAGAAGCCGCAGAGATTCGAGTTTGAGAATCCCGGTCAGAGACTTGCGTACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACAATGAAGGTTATGTCTTTCTCTCAACAAGAATCCCGAGCTATTTGCATTCTTTCTGCAAATGGGACAATTTCAAATGTTACCCTTCGGCAGGCAACTTCTTCTGGAGGTACCTTAACATATGAGGGTCGTTTTGAAATACTTGCATTGACCGGATCATATATGCCCACACAGAATGGAGCTACAAAGAGCAGATGTGGTGGGATGAGTGTCTCACTAGCGGGACAAGATGGACGAGTCGTCGGCGGTGGACTTGCTGGTTTGTTGGTAGCTGCCGGTCCTGTGCAAATTGTGGTCGGCAGTTTCCTTCCAGGTCACCAGCAAGAACAAAAGCCAAAAAAACCTAGAAACGAATCCACAACCATTTTCTTCCCTCCCGTCAACACCATTACTGGTGAAGAAATGAAGGCAATGTATGCTGGTGGTAACAAGCCTATTCTCACGACGCCGTCCTATCAAGAACAACATAATCCACCGTCCCCTACCCCTGTGACGGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCCGATCAAGAACCAAAAACACAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA 1053 47.39 MEEKETGVSRFTVTNDEALDNFELAPRTEALKSTSESKVTEVAVAAPPPGFVAATDTAPVSVAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNEISQAIVKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQIVVGSFLPGHQQEQKPKKPRNESTTIFFPPVNTITGEEMKAMYAGGNKPILTTPSYQEQHNPPSPTPVTGFKISSTDNLPLSDQEPKTQSQSNCEVSC* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6294210 6297986 - Chy6G113990.1 Chy06g00871 228580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00871 350 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Chy06g00871 350 ProSiteProfiles PPC domain profile profile. 140 283 IPR005175 -
Chy06g00871 350 MobiDBLite consensus disorder prediction 63 86 - -
Chy06g00871 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 8 330 - -
Chy06g00871 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 330 IPR039605 GO:0003680
Chy06g00871 350 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 264 - -
Chy06g00871 350 Gene3D - 145 274 - -
Chy06g00871 350 MobiDBLite consensus disorder prediction 302 350 - -
Chy06g00871 350 CDD DUF296 144 258 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00871 Chy09g01143 CCT
Chy06g00871 Chy09g01143 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00240 Chy-Chr6:1603331 Chy06g00871 Chy-Chr6:6294210 4.26E-93 dispersed
Chy06g00871 Chy-Chr6:6294210 Chy09g00976 Chy-Chr9:12454527 2.98E-109 dispersed
Chy11g01635 Chy-Chr11:22872895 Chy06g00871 Chy-Chr6:6294210 9.51E-58 dispersed
Chy06g00871 Chy-Chr6:6294210 Chy06g00872 Chy-Chr6:6298698 3.78E-90 tandem
Chy05g01226 Chy-Chr5:16689179 Chy06g00871 Chy-Chr6:6294210 4.00E-44 transposed
Chy06g00871 Chy-Chr6:6294210 Chy09g01143 Chy-Chr9:13662780 3.97E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00871 - - csv:101217222 652.514