Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00880 ATGGCGAGAAGAGGTGGTGCAATTGGATCGTTCCTCTGTATCCTTGTGGTTTTAATTTCTTCGCATATTCATGTTACAGCCAGATCGGATAAGGAAATTAGGGAGAGATTTTATGGAAATTTGATAAACTCGACGGCTCCGACTTCCGGTGACGGCAGCTTTGCTCAAATGTTCGATAAGGTTCTTGAGAAGGAGTTCTCAGACAATGATCTGCCTGAAGGTTCTGGTGGAAGCAGCTTTAATAGCAGTGTCGCTGATCAGGAGGCAGAGCTGGAAACAGTAGCTAAAATCACACATGAGAAGGGCAAGAAAAATGATAGTCAAAAGGCAAATGGGACAAGAGCATTCCAGTTACAGGATGTTTTTTCTCTGGAAAATGAAGAATCTGATGACGTTACAACGTTGATTGATAAAAAAGACAATGTATTTGTGATGTCGAACAAGAAGTCAAAGTATCCAGTACTTCAAGTAGATTTGAGATTGATCTCAGACTTGGTGGTGGTTATTGTTTCTGCCGCAATTGGAGGAATTATCTTTTCTTGTTTAGGGCAACCTGTTATTGTGGGCTATCTTCTTGCGGGATCAATCATTGGACCAGGAGGTCTAAAATTCATCAGCGAAATGGTGCAGGTTGAGACAGTGGCACAATTTGGTGTTGTATTTCTTCTTTTTGCTCTAGGATTGGAGTTTTCTTTGACAAAGTTAAAAGTTGTGGGAGCTGTGGCTGTTTTTGGAGGTTTTCTACAGATCATCATATTTATGTTCTTGTGTGGTATCGTTGCCATGTTAAGTGGAGCTAAATTATCCGAGGGTGTATTTGTTGGTTCATTTCTATCAATGTCATCTACAGCAGTGGTGGTCAAGTTCTTGGTAGAACGGAATAGCAGTAATACACTTCATGGTCAAGTTACTATTGGAACACTCATCTTACAGGACTGTGCCGTTGGTTTGTTGTTTGCCTTGCTCCCAGTTTTGGGTGGTCACAATGGTCTTATCTTAGGAATGATATCTATGGGAAAGTTGCTACTGGTGTTGTCAGTATATCTCACAGCCGCATCTATTTTGTCATGGTCATTTGTTCCCCGCTTTCTTAAGTTGATGATGCAACTGTCGTCTCAAACAAATGAGTTGTATCAGCTTGCTGCTGTGGCATTCTGCTTGCTGTCTGCTTGGTGCAGTGATAAGCTGGGCCTCAGTCTTGAGTTGGGTTCCTTTGTAGCTGGAGTTATGGTATCTACCACTGAGTTCGGTCAACATACTTTAGATCAGGTGGAACCAATCCGCAATTTGTTTGCAGCTTTGTTCCTTTCAAGTATTGGAATGCTCATTCATGTACATTTTCTGTGGAGCCATTTGGACATTTTGCTAGCGTCTGTAATGCTAGTTGTGTTTGTCAAGACAGCAGTTGCTACCATTGTTGCAAAGGCATTTGGATACGGTATTAGGACTTCTTTCCAGGTTGGGGTCATGCTTGCTCAAATTGGAGAATTTGCTTTTGTTCTCCTAAGCCGTGCTTCAAATCTTCATCTCATTGGGGGGAAGGTTTATCTGCTTCTTCTTGGAACAACGGCACTTAGTCTGGTGAGTTATGATTGCCTTTGTACTGTGATGCACTTCCCTGCTCTTATGGTGAGCCAGGGGAAGCGGAACAGTCTGTATGCTTTCTAA 1668 42.21 MARRGGAIGSFLCILVVLISSHIHVTARSDKEIRERFYGNLINSTAPTSGDGSFAQMFDKVLEKEFSDNDLPEGSGGSSFNSSVADQEAELETVAKITHEKGKKNDSQKANGTRAFQLQDVFSLENEESDDVTTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLTKLKVVGAVAVFGGFLQIIIFMFLCGIVAMLSGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSSNTLHGQVTIGTLILQDCAVGLLFALLPVLGGHNGLILGMISMGKLLLVLSVYLTAASILSWSFVPRFLKLMMQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFVAGVMVSTTEFGQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWSHLDILLASVMLVVFVKTAVATIVAKAFGYGIRTSFQVGVMLAQIGEFAFVLLSRASNLHLIGGKVYLLLLGTTALSLVSYDCLCTVMHFPALMVSQGKRNSLYAF* 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6348128 6355118 - Chy6G114080.1 Chy06g00880 228589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00880 555 Gene3D - 159 538 IPR038770 -
Chy06g00880 555 PANTHER K(+) EFFLUX ANTIPORTER 5 24 541 - -
Chy06g00880 555 Pfam Sodium/hydrogen exchanger family 166 528 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Chy06g00880 555 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 24 541 IPR045158 GO:0015386|GO:0071805|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00181 Chy-Chr1:1221375 Chy06g00880 Chy-Chr6:6348128 7.13E-30 dispersed
Chy02g01210 Chy-Chr2:8709485 Chy06g00880 Chy-Chr6:6348128 0 dispersed
Chy06g00189 Chy-Chr6:1238433 Chy06g00880 Chy-Chr6:6348128 9.74E-42 dispersed
Chy06g00880 Chy-Chr6:6348128 Chy11g00045 Chy-Chr11:506131 3.14E-09 dispersed
Chy06g00880 Chy-Chr6:6348128 Chy03g01644 Chy-Chr3:18293432 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00880 - - csv:101207607 962.6