Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00889 ATGACGGAAGTTCACTGTAGTATGCCAAGCGGAGATGATGAAGATACGCCGGCCAAATGCCGAGAGCGCCGGCGCCGTAGAATAGAGATGAGACGGTTAGCAACTGTATCGTCGGCTACCACTCATCACCAGAAGGAGAATCAAACTGGTGCTTCCGGTTTTGAGAAGAAGCGTGGTCAGAAAACGGACGGCGACGGTAATCCGGAGATTTCATCTTCTTCGTCATCGGGGGAGGACGTGAAGACTGTAAGAGCTTCACCATCTGTACCTCAGCCGGTTTTTGGGATGATGTCGGTTTCTGGGAGGTCACGTGAGATGGAGGATGCAGTATGTGTGAGCACGTGCGTTCTTGGTTCAGAAAATTTCCGACGACAAGTGGTGCATTTCTTCGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCATTATGTAGGGAGAAGATGCACGTGTTCGTACAGGAGGAATTTTCGCGCGTGATTAGCACTCGCGGGGAAAATGAGAGTGGCGGCGGTGGAGGTAGCGCGGGGGAGGAGCTTAAGTTTGAGGAGGAGGCGACTTGGAGAAGAGTGATGCGGCGGAGCTTTGAGAGAATGGACGAAGTGGCACTCAGTACTTGTGCCTGTGGGAGCGTCGGAGGCCAGTGTGGTTGCCATCCCATGGAGGTGGCTCTAGGCGGTTCTACCGCCGTCGTCGCTGTGCTCACGCCGGATCACATAATAGTCGCCAACTGCGGCGATTCACGCGCCGTCCTTTGCCGAGGAGGGACAGCCATTCCGCTTTCTATTGATCACAAGCCTGATAGAAATGATGAGCTAGCAAGGATTGAAGCTGCTGGAGGACGGGTGATTTTCGTAAATGGAGCCCGTGTTGAAGGAATCCTTGCAATGTCCCGTGCGATAGGGGACAAATATCTCAAGTCAGTTGTAATATCGGAACCTGAAGTTACTTTCACCAAAAGAGAATCAGAGGATGAATGTTTAATACTTGCTAGCGATGGTCTGTGGGATGTTCTTCCAAGTGAGTTGGCTTGTGAGGTAGCTCGTGAATGTCTCCAAGGAGTGGCAGCTACTACTACTACTACAATAGACCTCAATGCTGTGCCTCAAATTGAAGAAGAAGCAGCTGGAACTTCTTATCCTTCACGAAGTTCATTGGCTGCTGCATTGTTAACTCGTCTTGCTTTAGGGCGGAAAAGTACAGACAACATCAGTGTCATAGTTATTGATCTAAAAAGGAGTTGA 1245 50.84 MTEVHCSMPSGDDEDTPAKCRERRRRRIEMRRLATVSSATTHHQKENQTGASGFEKKRGQKTDGDGNPEISSSSSSGEDVKTVRASPSVPQPVFGMMSVSGRSREMEDAVCVSTCVLGSENFRRQVVHFFAVYDGHGGPHVAALCREKMHVFVQEEFSRVISTRGENESGGGGGSAGEELKFEEEATWRRVMRRSFERMDEVALSTCACGSVGGQCGCHPMEVALGGSTAVVAVLTPDHIIVANCGDSRAVLCRGGTAIPLSIDHKPDRNDELARIEAAGGRVIFVNGARVEGILAMSRAIGDKYLKSVVISEPEVTFTKRESEDECLILASDGLWDVLPSELACEVARECLQGVAATTTTTIDLNAVPQIEEEAAGTSYPSRSSLAAALLTRLALGRKSTDNISVIVIDLKRS* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6418046 6424267 + Chy6G114170.1 Chy06g00889 228598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00889 414 PANTHER PROTEIN PHOSPHATASE 2C 75-RELATED 37 413 - -
Chy06g00889 414 Gene3D - 86 414 IPR036457 -
Chy06g00889 414 Pfam Protein phosphatase 2C 94 354 IPR001932 -
Chy06g00889 414 MobiDBLite consensus disorder prediction 49 64 - -
Chy06g00889 414 SMART PP2C_4 83 409 IPR001932 -
Chy06g00889 414 MobiDBLite consensus disorder prediction 65 82 - -
Chy06g00889 414 ProSiteProfiles PPM-type phosphatase domain profile. 93 411 IPR001932 -
Chy06g00889 414 CDD PP2Cc 93 411 IPR001932 -
Chy06g00889 414 MobiDBLite consensus disorder prediction 8 23 - -
Chy06g00889 414 PANTHER ALPHABET, ISOFORM E-RELATED 37 413 - -
Chy06g00889 414 MobiDBLite consensus disorder prediction 1 90 - -
Chy06g00889 414 SUPERFAMILY PP2C-like 86 412 IPR036457 -
Chy06g00889 414 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Chy06g00889 414 MobiDBLite consensus disorder prediction 34 48 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00143 Chy-Chr3:1306793 Chy06g00889 Chy-Chr6:6418046 1.82E-67 dispersed
Chy04g00664 Chy-Chr4:7650706 Chy06g00889 Chy-Chr6:6418046 6.68E-69 dispersed
Chy06g00889 Chy-Chr6:6418046 Chy06g01234 Chy-Chr6:11214979 3.05E-70 dispersed
Chy06g00889 Chy-Chr6:6418046 Chy12g00232 Chy-Chr12:2656877 2.61E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00889 K14497 - csv:101206634 757.288