Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00896 ATGGGAAGGGGAAAAGTAGTGCTTGAAAGAATAGAGAACAGAGTGAATCGTCAAGTGACCTTCTCAAAGAGAAGAAATGGGTTATTGAAGAAGGCTTCTGAACTCTCTGTGCTTTGTGATGTTGATGTTGCTCTCATCATCTTCTCTACTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAAATCCTTGAGAGGTATCACCAGCAATGTTACACCTCTGGATCAACCACCAATCTTGATGAGAGTGACATACAGATAGAGGAGGTGTCAAAGCTGAGAGCTAAATATGAATCTCTTCAACGCTCCCATAGGAATTTTCTTGGAGAAGAACTTGAACCATTGACCTTAAAAGAGTTGCATAATTTTGAGAAACAGTTGGACAAAACTCTTTCCCAAACTAGACAGCGAAAGGCTGAAATAATGCTTCAAAAATTAGCAGACTTGCGTAAAATGGAGCAGGATCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTCGAAAAAGATCAAGAGAAGGAAGGTGGTGAGGAAGATCCAAAGAATTACGAAGTTGTGAGAGCTGACGACCGAAACATGATCAACGCCACCAGGTCAAATGATATGAAGGTTAAAGGGATGAAAACATGA 636 40.72 MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGSTDMNKILERYHQQCYTSGSTTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLTLKELHNFEKQLDKTLSQTRQRKAEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQEKEGGEEDPKNYEVVRADDRNMINATRSNDMKVKGMKT* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6529402 6534130 + Chy6G114240.1 Chy06g00896 228605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00896 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 176 - -
Chy06g00896 211 MobiDBLite consensus disorder prediction 158 190 - -
Chy06g00896 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy06g00896 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy06g00896 211 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Chy06g00896 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy06g00896 211 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Chy06g00896 211 Coils Coil 151 171 - -
Chy06g00896 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy06g00896 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy06g00896 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy06g00896 211 Pfam K-box region 89 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy06g00896 211 MobiDBLite consensus disorder prediction 158 211 - -
Chy06g00896 211 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Chy06g00896 211 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 176 - -
Chy06g00896 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy06g00896 211 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00896 Chy-Chr6:6529402 Chy11g01793 Chy-Chr11:24294112 5.01E-55 dispersed
Chy12g00600 Chy-Chr12:8546380 Chy06g00896 Chy-Chr6:6529402 1.66E-21 dispersed
Chy11g01998 Chy-Chr11:25858106 Chy06g00896 Chy-Chr6:6529402 3.61E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18144 PF01486 K-box 2.20E-23 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00896 K09264 - csv:101212022 373.244