Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00898 ATGAAAAGGATAGAAAATGCAACAAGTAGACAAGTAACATTCTCAAAGCGTAGAAATGGAGTATTGAAGAAAGCTTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCCGTCATTATTTTCTCACAGAAAGGCCGTCTCTATGAATTTGCAAGCTCTGAGATGCCAAAGATTATGGACCGCTATCGCAAATGTACTAGAGATGCCAAAAATAATGACACTAAATTTGATAGACAGCTCCACTTACAGCAATTAAGGCTTGAGGTTGAAAGCATTAATAAGCAGATGGAGTTGATGCAACTTTCTCACAGGAAGCTGTTGGGTTATGGACTGGATAATTGTTCCCTTGATGAACTTCAATTACTTGATGCTCAGCTTCAACGGAGCCTCTTCCAAATTAGGGCTAGAAAGGCTCAATTATACAATGAGCAGATACAACAACTACAAGAAAAGGAAAAACTCCTTTTGGAAGAAAACAGGATTTTGTCTTTAAAGGCAGCAGCTAAAGGTGGTGACGCCACGCACGGTGTCCGGAGTAGCTCAAGTACTGAAGCACCACGGAACAGTTTGGAATCGGAGGAAGAATTACATGTTTCTGATCCATTACCAAGTAAGACTCAAAAGCAGAAAGAAAATCAAGATGCTCTACATTTTCCAAAGGGTATTGTTCAAATCAAAACCAAAAGTAATGGAATGAACAATAATTTGTCAACCGGGAATGACTCTCCAAGCACCAAGACACCAACTTTAGTAGCGAGATTAATGGGTTTGGATATTCTTCCAGAATCCAACTCTAGTCCTTATTCTTCAACCACACCCAGAAGTTCAAAAATGACCACACAATTAAAAAGTGTGTCTCGTTCTTTACCAGAAACTCCAAGATCATCCTGTGAAAGGAAATCAAATGTGGATAATTATCACCACCGTTTCTCACTTCAAATCCCCAATAATTATGACCATAAAGAGAACAATGCAATTCCAAATCCAAATCCAAATCCAAGTAGTACTACTCCAACCCATTCTGCTAAAGAGATAGTAAAGCAAATGAAAGAAAGTGTGAGTAGAAGAAAAGAAGCTGCTCTCATTGATATCACCAATCTTAATTACAATAATACAAGAAGAGATCAAGATATGATCATTAATTACCAAACCAAACCCAAAAACCAAACAAGACAGAGAGTAGTGTTGGAGCCAAAAGTTGAAGCCATTAAAGAAGCTGTGGATTTAGAGACGACGATGAAGGTAAAGAAGCCAAAGGGTGTGAAGACGACGAAGACGACGAAGACGACAAAGGTGGCGGTGTCGAAGAAGGGTAATAAGAAAGAGGAGACATTTGTAGTTTCATCAAGAATCACAAAAGCAGCCATTGATGCTCCTCTTAAGAAAACTCCATTGTCTAATCAGCTTTTGAACTTCGGTTCTGTTCCCACTACCATTCTCATCAACAAAAATCTTCCATTTTCCTCATCCATTAAACCAACTCAAATCCAGGCACCGTGCAAACGGAATCAAGGTACGGATCAGACAAGCGATAAAGAATCAAAACGATACTTCCAATCACCTAACCACCAACACTCCCTCATCCAATTACCACCCAAAAAAGACGGCAACAACCCCAAACATCACATCATAACCACCGTCGCCGCCGCCGCAAATTGTAATGACAGCCATGAGATCACGGCAGAGGTAGATTACGTCAGACAAATACTCCTCCGCCGTAGTACTACTTCCTCTTCAATATACTCCTCCGTTTTCCTCGAAAATTTAAATTACAAAAATGCCCACAATTACAAAATTTCAATTCCCCATAGAAAATTACTGAGCCAGTTGGTGGAGGAGTTATTGAAGCCATATCTGGAACTTGGGGCAGACTACCGGGAGGCAGGGTCGGGGTGGGCGGAGGTGGGGGAGAAATTGTGTGAGAAAGTGAGGAAAATGCCACGTGCGAAGTGTGAGGTGTTGGAGGACATAGATGGAATAATAGAAAAGGATATGGGTATTGTGGGAATTGGATATGAGGAGGAGGGTGAGGGGATAGTGAAAGAGATCGAGGAGTGGATGGTGGAGGAACTTTTGAATGAAACGGTGCGTTTTGTAGAGACAGAGATGGCAGGAGAATCACGTGGGAGATGCCACATGGAAGTATTGGGACCCACATAG 2160 41.34 MKRIENATSRQVTFSKRRNGVLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPKIMDRYRKCTRDAKNNDTKFDRQLHLQQLRLEVESINKQMELMQLSHRKLLGYGLDNCSLDELQLLDAQLQRSLFQIRARKAQLYNEQIQQLQEKEKLLLEENRILSLKAAAKGGDATHGVRSSSSTEAPRNSLESEEELHVSDPLPSKTQKQKENQDALHFPKGIVQIKTKSNGMNNNLSTGNDSPSTKTPTLVARLMGLDILPESNSSPYSSTTPRSSKMTTQLKSVSRSLPETPRSSCERKSNVDNYHHRFSLQIPNNYDHKENNAIPNPNPNPSSTTPTHSAKEIVKQMKESVSRRKEAALIDITNLNYNNTRRDQDMIINYQTKPKNQTRQRVVLEPKVEAIKEAVDLETTMKVKKPKGVKTTKTTKTTKVAVSKKGNKKEETFVVSSRITKAAIDAPLKKTPLSNQLLNFGSVPTTILINKNLPFSSSIKPTQIQAPCKRNQGTDQTSDKESKRYFQSPNHQHSLIQLPPKKDGNNPKHHIITTVAAAANCNDSHEITAEVDYVRQILLRRSTTSSSIYSSVFLENLNYKNAHNYKISIPHRKLLSQLVEELLKPYLELGADYREAGSGWAEVGEKLCEKVRKMPRAKCEVLEDIDGIIEKDMGIVGIGYEEEGEGIVKEIEEWMVEELLNETVRFVETEMAGESRGRCHMEVLGPT* 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6546436 6563401 - Chy6G114260.1 Chy06g00898 228607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00898 719 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
Chy06g00898 719 Pfam DUF761-associated sequence motif 237 266 IPR032795 -
Chy06g00898 719 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Chy06g00898 719 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Chy06g00898 719 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 385 702 - -
Chy06g00898 719 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 179 389 - -
Chy06g00898 719 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Chy06g00898 719 Coils Coil 138 165 - -
Chy06g00898 719 MobiDBLite consensus disorder prediction 307 343 - -
Chy06g00898 719 Pfam Domain of unknown function (DUF4378) 564 694 IPR025486 -
Chy06g00898 719 MobiDBLite consensus disorder prediction 226 247 - -
Chy06g00898 719 Pfam K-box region 80 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy06g00898 719 MobiDBLite consensus disorder prediction 261 345 - -
Chy06g00898 719 CDD MADS_MEF2_like 1 71 IPR033896 GO:0000977|GO:0045944
Chy06g00898 719 Gene3D - 7 84 IPR036879 GO:0003677|GO:0046983
Chy06g00898 719 ProSiteProfiles K-box domain profile. 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy06g00898 719 MobiDBLite consensus disorder prediction 494 536 - -
Chy06g00898 719 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Chy06g00898 719 MobiDBLite consensus disorder prediction 262 292 - -
Chy06g00898 719 MobiDBLite consensus disorder prediction 168 247 - -
Chy06g00898 719 SUPERFAMILY SRF-like 1 67 IPR036879 GO:0003677|GO:0046983
Chy06g00898 719 Coils Coil 82 102 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00898 Chy09g00944 CCT
Chy06g00898 Chy09g00944 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00898 Chy-Chr6:6546436 Chy11g01998 Chy-Chr11:25858106 7.25E-48 dispersed
Chy09g00946 Chy-Chr9:12216233 Chy06g00898 Chy-Chr6:6546436 1.80E-17 dispersed
Chy09g00944 Chy-Chr9:12199067 Chy06g00898 Chy-Chr6:6546436 1.20E-57 transposed
Chy06g00217 Chy-Chr6:1413102 Chy06g00898 Chy-Chr6:6546436 6.87E-17 wgd
Chy06g00898 Chy-Chr6:6546436 Chy09g01173 Chy-Chr9:13921137 4.51E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18145 PF14309 DUF4378 6.90E-08 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00898 - - csv:101211782 923.694