Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy06g00898 | ATGAAAAGGATAGAAAATGCAACAAGTAGACAAGTAACATTCTCAAAGCGTAGAAATGGAGTATTGAAGAAAGCTTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCCGTCATTATTTTCTCACAGAAAGGCCGTCTCTATGAATTTGCAAGCTCTGAGATGCCAAAGATTATGGACCGCTATCGCAAATGTACTAGAGATGCCAAAAATAATGACACTAAATTTGATAGACAGCTCCACTTACAGCAATTAAGGCTTGAGGTTGAAAGCATTAATAAGCAGATGGAGTTGATGCAACTTTCTCACAGGAAGCTGTTGGGTTATGGACTGGATAATTGTTCCCTTGATGAACTTCAATTACTTGATGCTCAGCTTCAACGGAGCCTCTTCCAAATTAGGGCTAGAAAGGCTCAATTATACAATGAGCAGATACAACAACTACAAGAAAAGGAAAAACTCCTTTTGGAAGAAAACAGGATTTTGTCTTTAAAGGCAGCAGCTAAAGGTGGTGACGCCACGCACGGTGTCCGGAGTAGCTCAAGTACTGAAGCACCACGGAACAGTTTGGAATCGGAGGAAGAATTACATGTTTCTGATCCATTACCAAGTAAGACTCAAAAGCAGAAAGAAAATCAAGATGCTCTACATTTTCCAAAGGGTATTGTTCAAATCAAAACCAAAAGTAATGGAATGAACAATAATTTGTCAACCGGGAATGACTCTCCAAGCACCAAGACACCAACTTTAGTAGCGAGATTAATGGGTTTGGATATTCTTCCAGAATCCAACTCTAGTCCTTATTCTTCAACCACACCCAGAAGTTCAAAAATGACCACACAATTAAAAAGTGTGTCTCGTTCTTTACCAGAAACTCCAAGATCATCCTGTGAAAGGAAATCAAATGTGGATAATTATCACCACCGTTTCTCACTTCAAATCCCCAATAATTATGACCATAAAGAGAACAATGCAATTCCAAATCCAAATCCAAATCCAAGTAGTACTACTCCAACCCATTCTGCTAAAGAGATAGTAAAGCAAATGAAAGAAAGTGTGAGTAGAAGAAAAGAAGCTGCTCTCATTGATATCACCAATCTTAATTACAATAATACAAGAAGAGATCAAGATATGATCATTAATTACCAAACCAAACCCAAAAACCAAACAAGACAGAGAGTAGTGTTGGAGCCAAAAGTTGAAGCCATTAAAGAAGCTGTGGATTTAGAGACGACGATGAAGGTAAAGAAGCCAAAGGGTGTGAAGACGACGAAGACGACGAAGACGACAAAGGTGGCGGTGTCGAAGAAGGGTAATAAGAAAGAGGAGACATTTGTAGTTTCATCAAGAATCACAAAAGCAGCCATTGATGCTCCTCTTAAGAAAACTCCATTGTCTAATCAGCTTTTGAACTTCGGTTCTGTTCCCACTACCATTCTCATCAACAAAAATCTTCCATTTTCCTCATCCATTAAACCAACTCAAATCCAGGCACCGTGCAAACGGAATCAAGGTACGGATCAGACAAGCGATAAAGAATCAAAACGATACTTCCAATCACCTAACCACCAACACTCCCTCATCCAATTACCACCCAAAAAAGACGGCAACAACCCCAAACATCACATCATAACCACCGTCGCCGCCGCCGCAAATTGTAATGACAGCCATGAGATCACGGCAGAGGTAGATTACGTCAGACAAATACTCCTCCGCCGTAGTACTACTTCCTCTTCAATATACTCCTCCGTTTTCCTCGAAAATTTAAATTACAAAAATGCCCACAATTACAAAATTTCAATTCCCCATAGAAAATTACTGAGCCAGTTGGTGGAGGAGTTATTGAAGCCATATCTGGAACTTGGGGCAGACTACCGGGAGGCAGGGTCGGGGTGGGCGGAGGTGGGGGAGAAATTGTGTGAGAAAGTGAGGAAAATGCCACGTGCGAAGTGTGAGGTGTTGGAGGACATAGATGGAATAATAGAAAAGGATATGGGTATTGTGGGAATTGGATATGAGGAGGAGGGTGAGGGGATAGTGAAAGAGATCGAGGAGTGGATGGTGGAGGAACTTTTGAATGAAACGGTGCGTTTTGTAGAGACAGAGATGGCAGGAGAATCACGTGGGAGATGCCACATGGAAGTATTGGGACCCACATAG | 2160 | 41.34 | MKRIENATSRQVTFSKRRNGVLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPKIMDRYRKCTRDAKNNDTKFDRQLHLQQLRLEVESINKQMELMQLSHRKLLGYGLDNCSLDELQLLDAQLQRSLFQIRARKAQLYNEQIQQLQEKEKLLLEENRILSLKAAAKGGDATHGVRSSSSTEAPRNSLESEEELHVSDPLPSKTQKQKENQDALHFPKGIVQIKTKSNGMNNNLSTGNDSPSTKTPTLVARLMGLDILPESNSSPYSSTTPRSSKMTTQLKSVSRSLPETPRSSCERKSNVDNYHHRFSLQIPNNYDHKENNAIPNPNPNPSSTTPTHSAKEIVKQMKESVSRRKEAALIDITNLNYNNTRRDQDMIINYQTKPKNQTRQRVVLEPKVEAIKEAVDLETTMKVKKPKGVKTTKTTKTTKVAVSKKGNKKEETFVVSSRITKAAIDAPLKKTPLSNQLLNFGSVPTTILINKNLPFSSSIKPTQIQAPCKRNQGTDQTSDKESKRYFQSPNHQHSLIQLPPKKDGNNPKHHIITTVAAAANCNDSHEITAEVDYVRQILLRRSTTSSSIYSSVFLENLNYKNAHNYKISIPHRKLLSQLVEELLKPYLELGADYREAGSGWAEVGEKLCEKVRKMPRAKCEVLEDIDGIIEKDMGIVGIGYEEEGEGIVKEIEEWMVEELLNETVRFVETEMAGESRGRCHMEVLGPT* | 720 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 6546436 | 6563401 | - | Chy6G114260.1 | Chy06g00898 | 228607 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy06g00898 | 719 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 3 | 50 | IPR002100 | GO:0003677|GO:0046983 | |
Chy06g00898 | 719 | Pfam | DUF761-associated sequence motif | 237 | 266 | IPR032795 | - | |
Chy06g00898 | 719 | PRINTS | MADS domain signature | 31 | 52 | IPR002100 | GO:0003677|GO:0046983 | |
Chy06g00898 | 719 | PRINTS | MADS domain signature | 16 | 31 | IPR002100 | GO:0003677|GO:0046983 | |
Chy06g00898 | 719 | PANTHER | LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN | 385 | 702 | - | - | |
Chy06g00898 | 719 | PANTHER | LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN | 179 | 389 | - | - | |
Chy06g00898 | 719 | SMART | madsneu2 | 1 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Chy06g00898 | 719 | Coils | Coil | 138 | 165 | - | - | |
Chy06g00898 | 719 | MobiDBLite | consensus disorder prediction | 307 | 343 | - | - | |
Chy06g00898 | 719 | Pfam | Domain of unknown function (DUF4378) | 564 | 694 | IPR025486 | - | |
Chy06g00898 | 719 | MobiDBLite | consensus disorder prediction | 226 | 247 | - | - | |
Chy06g00898 | 719 | Pfam | K-box region | 80 | 165 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Chy06g00898 | 719 | MobiDBLite | consensus disorder prediction | 261 | 345 | - | - | |
Chy06g00898 | 719 | CDD | MADS_MEF2_like | 1 | 71 | IPR033896 | GO:0000977|GO:0045944 | |
Chy06g00898 | 719 | Gene3D | - | 7 | 84 | IPR036879 | GO:0003677|GO:0046983 | |
Chy06g00898 | 719 | ProSiteProfiles | K-box domain profile. | 82 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Chy06g00898 | 719 | MobiDBLite | consensus disorder prediction | 494 | 536 | - | - | |
Chy06g00898 | 719 | ProSiteProfiles | MADS-box domain profile. | 1 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
Chy06g00898 | 719 | MobiDBLite | consensus disorder prediction | 262 | 292 | - | - | |
Chy06g00898 | 719 | MobiDBLite | consensus disorder prediction | 168 | 247 | - | - | |
Chy06g00898 | 719 | SUPERFAMILY | SRF-like | 1 | 67 | IPR036879 | GO:0003677|GO:0046983 | |
Chy06g00898 | 719 | Coils | Coil | 82 | 102 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Chy06g00898 | Chy09g00944 | CCT | |
Chy06g00898 | Chy09g00944 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy06g00898 | Chy-Chr6:6546436 | Chy11g01998 | Chy-Chr11:25858106 | 7.25E-48 | dispersed | |
Chy09g00946 | Chy-Chr9:12216233 | Chy06g00898 | Chy-Chr6:6546436 | 1.80E-17 | dispersed | |
Chy09g00944 | Chy-Chr9:12199067 | Chy06g00898 | Chy-Chr6:6546436 | 1.20E-57 | transposed | |
Chy06g00217 | Chy-Chr6:1413102 | Chy06g00898 | Chy-Chr6:6546436 | 6.87E-17 | wgd | |
Chy06g00898 | Chy-Chr6:6546436 | Chy09g01173 | Chy-Chr9:13921137 | 4.51E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18145 | PF14309 | DUF4378 | 6.90E-08 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy06g00898 | - | - | csv:101211782 | 923.694 |