Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00907 ATGGTGAAGAACAAGTCAAATTCCGAGAGTAGTAATTGCCGTCGCCCCATTTTCTCCGATGAGGATTTTATGTTAGCGGCGAGTAATCCCAAGAAGAGGGCCGGTAGGAAGAAGTTTAAGGAGACAAGGCATCCGGTTTACAGAGGAGTCAGGAGGAGGAACTCTGGCAAGTGGGTCTGTGAAGTGAGAGAGCCCAATAAGAAGTCAAGGATTTGGCTTGGTACTTTTCCAACGGCGGAGATGGCGGCTCGAGCTCACGACGTCGCCGCCATCGCCCTTAGAGGTCTTACTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGATTGCCTGTGCCGGCGTCTGCTGACGCCAGAGATATCCAGAAGGCGGCAGCGGAGGCGGCGGAGGCTTTCAGGCCGGCAGAGTCAGATGGGTCTTCCGTAGATGACTCAAGGACGGAAAATGGGATGATGGTGGAGACGACGACGCCGGAAAACTTGTTTTACATGGATGAGGAAGCAGTTTTCGGAATGCCTGGATTGTTGGAGGATATGGCTGCGGGAATGATGTTGCCTCCACCTCAGCATTTCCGTGATGACATGGATTTTTATTCTGACGTGTCATTGTGGAGCTATTAA 618 52.1 MVKNKSNSESSNCRRPIFSDEDFMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGLTACLNFADSAWRLPVPASADARDIQKAAAEAAEAFRPAESDGSSVDDSRTENGMMVETTTPENLFYMDEEAVFGMPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY* 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6649941 6650981 - Chy6G114350.1 Chy06g00907 228616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00907 205 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677
Chy06g00907 205 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Chy06g00907 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 205 IPR045277 GO:0003700
Chy06g00907 205 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Chy06g00907 205 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Chy06g00907 205 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Chy06g00907 205 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Chy06g00907 205 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Chy06g00907 205 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 4 205 - -
Chy06g00907 205 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00907 Chy09g00916 CCT
Chy06g00907 Chy09g00916 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00907 Chy-Chr6:6649941 Chy09g01185 Chy-Chr9:14050810 1.61E-39 dispersed
Chy06g00907 Chy-Chr6:6649941 Chy06g00908 Chy-Chr6:6663108 3.91E-34 tandem
Chy09g00916 Chy-Chr9:11941196 Chy06g00907 Chy-Chr6:6649941 6.04E-81 transposed
Chy06g00907 Chy-Chr6:6649941 Chy09g01184 Chy-Chr9:14035460 2.88E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18147 PF00847 AP2 1.30E-15 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00907 - K09286 csv:101220749 377.096