Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00908 ATGTCTGATAATAATAATAATTCTACCCTCCCCCCCGGTCGCCACCGCACCTTCCGCGGAATCCGTTCCCGTTCCGGCAAATGGGTCTCTGAAATTCGGGAGCCACGTAAGGCTACTCGTATTTGGCTTGGAACATACCCAACTCCTGAAATGGCTGCCGCCGCCTACGACGTCGCCGCCCTCACTCTCAAAGGCCCTAATGCTTCCCTTAATTTCCCTCATTCTCTTTTATCTTATCCCATTCCTCCTTCCAACTCCCCTTCTGATATTCGCGCCGCCGCAGCCATTGCTGCCGCCGCCAGAAACCCCAAGAACACTAACCCACAAGCTTCTCCTGCTACTACCTCTACTGCTACAACTACTGATTCTTCAGGGACTGAAGCGATCGATGGAGGCGGGCCGTCCTCCCATGCCACGGGGGATTGTTCCGGCAAGTTTGTGGACGAGGAAGAGTTATTGAACATGCCGAATTTACTGGTGGATATGGCGGAGGGAATGCTGGTGAGTCCACCGAGGATGAAGTCGCCATCTTCCGATGACAATTCTCCCAACCATTCTCAAGGAGATGATGGATTATGGAGTTACTCCAAATAA 594 52.36 MSDNNNNSTLPPGRHRTFRGIRSRSGKWVSEIREPRKATRIWLGTYPTPEMAAAAYDVAALTLKGPNASLNFPHSLLSYPIPPSNSPSDIRAAAAIAAAARNPKNTNPQASPATTSTATTTDSSGTEAIDGGGPSSHATGDCSGKFVDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDNSPNHSQGDDGLWSYSK* 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6663108 6663701 - Chy6G114360.1 Chy06g00908 228617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00908 197 MobiDBLite consensus disorder prediction 164 197 - -
Chy06g00908 197 SMART rav1_2 17 79 IPR001471 GO:0003700|GO:0006355
Chy06g00908 197 Pfam AP2 domain 19 65 IPR001471 GO:0003700|GO:0006355
Chy06g00908 197 MobiDBLite consensus disorder prediction 101 143 - -
Chy06g00908 197 MobiDBLite consensus disorder prediction 174 197 - -
Chy06g00908 197 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Chy06g00908 197 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Chy06g00908 197 CDD AP2 18 75 IPR001471 GO:0003700|GO:0006355
Chy06g00908 197 ProSiteProfiles AP2/ERF domain profile. 17 73 IPR001471 GO:0003700|GO:0006355
Chy06g00908 197 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
Chy06g00908 197 MobiDBLite consensus disorder prediction 102 130 - -
Chy06g00908 197 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Chy06g00908 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 10 195 - -
Chy06g00908 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 195 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00908 Chy09g01184 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00908 Chy-Chr6:6663108 Chy09g01185 Chy-Chr9:14050810 4.71E-56 dispersed
Chy06g00907 Chy-Chr6:6649941 Chy06g00908 Chy-Chr6:6663108 3.91E-34 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18148 PF00847 AP2 7.40E-10 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00908 - - csv:101217355 342.428