Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00920 ATGGCCTCAAAACAATCTTCAAAACAACCCAATATTTCCCTACGGACAAAATTCTACACCATCTCTCTAATCCTCTTCCTCTGTTTTTCCTCTTACTTTCTCGGCCTCCGCCAACGACAACCCTCCTCTGCCGCCAGCCTCCCATGCACCACCACCCTCCAAAACATCACCATCACCGCTGCAAAACCTTTTCCGGCATGTGGGTTGGTGTACAGCGAGTACACGCCATGTGAGGACACCCAAAGGTCTCTGAAGTTCAGCAGAGATAGGCTGATTTATAGAGAGAGGCATTGCCCGGAGAAGGAGGAGGCCTTGAAGTGCCGGATTCCTGCGCCTCCGGGGTACCGAAATCCGTTCGCGTGGCCGGTGAGTAGAGATTTGGCGTGGTATGTGAATGTGCCACATAAGGATCTGACGGTGGAGAAAGCTGTGCAGAATTGGATTAGATATGAAGGGGAGACGTTTAGATTTCCGGGCGGAGGGACGATGTTTCCCGACGGAGCTGATGCGTATATTGATAATATTGGGAAATTAATTAATCTTAAAGATGGATCCATCAGAACCGCCATTGATACGGGCTGTGGGATAGATTTTGTGTCATTTGGGATGACTTTGGATGAAAGTTGGAGATTCAATTTGGTTGTCCAAGTGGGAAGTTGGGGAGCTTATTTACTGTCAAGGGACATCATAACGATGTCATTTGCACCAAGGGACACTCATGAAGCCCAAGTTCAATTTGCTTTAGAAAGAGGAGTTCCTGCACTCATTGGCATTCTTGCTTCTAAGAGGCTCCCTTATCCTTCAAATGCCTTTGACATGGCTCATTGCTCTCGCTGCCTAATCCCTTGGTCTCAATATGATGGGATCTTTCTCATTGAAGTTGATCGAGTTCTACGCCCTGGCGGGTACTGGATTTTATCAGGCCCTCCTATTAACTGGAATAAACACTGGAAAGGTTGGGAAAGAACGAAGGAAGATTTGAATTCTGAACAGCTTGCTATTGAAAAGGTTGCCAAAAGCCTCTGTTGGACTAAACTAGTTGAAGATGGTGATATTGCCATTTGGCAAAAGCCTATCAATCACTTGAATTGTAAAGTCAACCGCAAGATCACTAAGAATCCACCTTTCTGTAATGCTCAAGATCCTGACAGAGCTTGGTATACAGATATGCAAGCTTGTTTGACACATTTGCCTGAAGTTTCAAACAGTAAGGAAATAGCAGGAGGGAAGTTGGCAAGATGGCCAGAAAGGCTAAATGCAATCCCACAAAGGATTATTACAGGAACTGTGGAAGGGGTGACAGAAGAAACTTTCATTCATGATTCTGAGCTATGGAAGAAGAGGTTGACCTATTACAGAACCATAAACAATCAGTTGAATAAGCCTGGTCGGTACCGCAATTTCTTAGACATGAATGCTTTCTTGGGTGGATTTGCTGCTGCTCTGGTTGATGATCCAGTTTGGGTGATGAATGTGGTCCCTGTGGATGCCAAAGTCAATACGATTGGAGTCATATATGACAGAGGTTTGATCGGCACGTATCAAGATTGGTGTGAGGCAATGTCTACTTATCCAAGAACTTATGACTTCATTCATGCTGATTCAATTTTTAGCCTCTATGAGAATAGATGTGAAATGGAAGACATTCTACTTGAAATGGACAGAATTCTGAGGCCAGAAGGAAGCGTAATCTTTCGAGAGAATATTGACACTTTGGCGAAAATCAAGATGATAACCGATAATTTGAATTGGAGTAGTCAAATTGTGCATCATGAAGATGGACCTTATCATATGGAGAAACTTTTATTTGCAGTAAAAAACTATTGCACAGCCCCTCCTGAACTTTCTGATCAACAGCAAGAATCTAAAGCAACTTAA 1878 43.77 MASKQSSKQPNISLRTKFYTISLILFLCFSSYFLGLRQRQPSSAASLPCTTTLQNITITAAKPFPACGLVYSEYTPCEDTQRSLKFSRDRLIYRERHCPEKEEALKCRIPAPPGYRNPFAWPVSRDLAWYVNVPHKDLTVEKAVQNWIRYEGETFRFPGGGTMFPDGADAYIDNIGKLINLKDGSIRTAIDTGCGIDFVSFGMTLDESWRFNLVVQVGSWGAYLLSRDIITMSFAPRDTHEAQVQFALERGVPALIGILASKRLPYPSNAFDMAHCSRCLIPWSQYDGIFLIEVDRVLRPGGYWILSGPPINWNKHWKGWERTKEDLNSEQLAIEKVAKSLCWTKLVEDGDIAIWQKPINHLNCKVNRKITKNPPFCNAQDPDRAWYTDMQACLTHLPEVSNSKEIAGGKLARWPERLNAIPQRIITGTVEGVTEETFIHDSELWKKRLTYYRTINNQLNKPGRYRNFLDMNAFLGGFAAALVDDPVWVMNVVPVDAKVNTIGVIYDRGLIGTYQDWCEAMSTYPRTYDFIHADSIFSLYENRCEMEDILLEMDRILRPEGSVIFRENIDTLAKIKMITDNLNWSSQIVHHEDGPYHMEKLLFAVKNYCTAPPELSDQQQESKAT* 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6769047 6773709 + Chy6G114480.1 Chy06g00920 228629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00920 625 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 216 606 IPR004159 GO:0008168
Chy06g00920 625 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 73 205 IPR004159 GO:0008168
Chy06g00920 625 Gene3D Vaccinia Virus protein VP39 161 344 IPR029063 -
Chy06g00920 625 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 57 614 IPR004159 GO:0008168
Chy06g00920 625 PANTHER METHYLTRANSFERASE PMT15-RELATED 57 614 - -
Chy06g00920 625 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 372 574 IPR029063 -
Chy06g00920 625 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 144 324 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00920 - - - csv:101216405 1228.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00201 Chy-Chr6:1314936 Chy06g00920 Chy-Chr6:6769047 0 dispersed
Chy03g00144 Chy-Chr3:1310258 Chy06g00920 Chy-Chr6:6769047 3.62E-143 transposed
Chy04g00802 Chy-Chr4:10369365 Chy06g00920 Chy-Chr6:6769047 4.29E-176 transposed
Chy05g00317 Chy-Chr5:3155916 Chy06g00920 Chy-Chr6:6769047 2.99E-144 transposed
Chy05g00667 Chy-Chr5:8453387 Chy06g00920 Chy-Chr6:6769047 0 transposed
Chy06g02115 Chy-Chr6:25356980 Chy06g00920 Chy-Chr6:6769047 0 transposed
Chy09g01360 Chy-Chr9:15442635 Chy06g00920 Chy-Chr6:6769047 0 transposed
Chy10g00514 Chy-Chr10:11724453 Chy06g00920 Chy-Chr6:6769047 2.74E-142 transposed
Chy10g01052 Chy-Chr10:15723549 Chy06g00920 Chy-Chr6:6769047 2.87E-90 transposed
Chy06g00198 Chy-Chr6:1297086 Chy06g00920 Chy-Chr6:6769047 3.01E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g607 . . . . . . . Bma14g02088 Cmo16g00150 Cmo18g01254 . . . . Sed02g1606 . Cpe14g00121 Bhi01g01355 Tan01g0280 Cmetu06g0945 . Hepe07g0181 Mch10g0177 . . . . . . . . . . . . Lsi05g01255 . . Cme06g00973 . . . . . . . . . . . Cma16g00143 Cma18g01231 Car16g00124 Car18g01135 . . . . . . . . . Cla05g00857 Cam05g0943 Cec05g0948 Cco05g0948 Clacu05g0930 Cmu05g0888 Cre05g0973 . Csa03g01687 Chy06g00920 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002128 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 3 1 2 2 2 2 2 2 2 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00920 Chy_Chr06 FPKM 1.197252 0.0 1.321574 1.434934 0.0 1.017919 0.513319 0.937056 1.068705 1.561978