Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00925 ATGCCTGGTGGTGCAATTACTGATCCCAGCTTTCTACCTTACCCAATTCCCAGTTCAATGCCTAGTTCCTCTGAATTCTCCAGTTCCTTAAGGAAAATGGATGGTTATGGAGAAGTATGTCTGCTTGGAGATGGCTTTGATCCTACTGGAATTGTGAGGATAAGGGAAGATGAATATGATAGCAGATCAGGCAGCGACAATATCGATGGCGCTGTATCGGGGGATGATCACGATGCTAACGACGAACAACCACCAAAAAGGAAGAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTCAAGGAGTGTCCCCATCCCGATGATAAACAAAGAAATGAGCTGAGTAGAAGGCTTGGTTTGGAGACAAAGCAAGTGAAATTTTGGTTTCAAAATCGTCGAACACAGATGAAGACACAAATAGAACGACACGAGAATGCAATTCTTAAGCAAGAAAATGATAAGCTCCGGGCCGAGAATAGTGTGATGAAGGATGCTATTTCTAACCCAACGTGTAGTACTTGTGGGGGCCCTTCAATTCCTGTTCATTTATCATTTGAAGAACACCAGCTTAGGATTGAGAATGCCAGATTAAGAGAGGAACTGCATCGGTTATATGCTGTCACCAACAAATTCTTGGGCTGGCCAGTTGTGCCGTTTGCCAATCATGGCTCTTCGCCAAGTTCTGAATCTTGCTTGGAACTTTCTGTAGGAAGAAATGGACCCGGAAATTTGAGTACTGTTTCTGATTCTATGGGGCTTAACTTGGGAAACGAACTTTTCAGTGCTGGCCCTGTGATGCCTATTAGTAAGCCTGACATAGGCATGCTAAGTAATGATATACCACTTGAGAGAACAATATATGTGGATCTTGCTTTGGCAGCTATGAATGAATTGATTAAGATGGCTCAAATGGATGGTCCCCTTTGGATCAGAAGTCGGGACGACAGTGGCAAAGAGACATTGAACCTTGATGAATATTCAAGGACATTTCCTTCTTCGGCTGGTATGAAGCACACTAATTGGACAACAGAGGCGACCAGAGATACTACAATGGTCATCATCAACAGCTTGGCACTTGTTGAGACATTGATGGACGCAAACCGATGGGCAGAAATGTTTCCTTGTTTGATTGCTCGAGCTACTACAATCGATGTGATATCAAGTGGCATGGGTGGAACTAGAAATGGTGCATTACAATTGGTATCTCTCTATGCCTTCCCTTCTCCCGACATTAATATGCATGCTGAACTGCGAGTGCTTTCCCCACTCGTTCCTGTTCGTACACTTAAGTTCCTCCGCTTCTGCAAGCAGCATGCTGATGGTCTATGGGCTGTAGTTGATGTTTCCATTGGAGAAGGTTCAAATTCAAACTCATTTTTCGGTTGCAAGAGACTCCCTTCGGGCTGTGTTGTGCAAGATATGCCCAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAGACAGTTATACACCAGCTTTACCGCCAGTTAATTAGTTCGGGCAGCGGCTTTGGTTCACAACGGTGGCTTGCTACCCTTCAAAGACAATGCGACTGTTTGGCAATTCTTATGTCGTCTACTATCCCCACTGAAGATCCTGCAGGTCTCGATGTTTCTCGTTACTCCATCCTTGTGCAGTGTGTGTTTGCTTTCAGGTTCTTACATGTGTCATTTAAAACAGGAATATCGCCATCTGGTAGGAGAAGTATGCTGAAACTGTCGCAGCGTATGGTGGATAACTTCTGTTCTGGGGTTTGTAGTTCGACTTTGCATAAGTGGGATAAGCTCGTTGTAGGCAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAGAGTATCAACAATCCTGGTGAGCCACCCGGTATCGTGTTGAGTGCTGCAACTTCGGTTTGGATGCCAGTAACTCAACAGAGGTTGTTTGCATTCTTGCAAGACGAGTGCTTACGAAGTGAGTGGGATATTTTATCCAATAGCCGGCCAACGCTAGAAATGCTCCGCATCTCGAAAGGCCAGGGACCGGATAACCGTGTTTCTCTACTGTGTGCTAATCCCATGAACGCTAATGAGAACACAATGTTCATATTGCAAGAGACTTGGACTGATGTATCAGGCTCACTGGTTGTTTTCGCTCCAGTCGACACATCGTCCGTTAATTTGGTAATGCGCGGAGGAGATTCTGCTTATGTATCACTATTACCATCAGGATTTGCAATTCTCCCCATTGATCAATCCAACTATGCTTGTACAAACGGCGAAGACGCATCAGTCAAGTCAAGCATTAACAGTGGCCATGGTGGTGCATGTCTCCTCACAGTTGCATTCCAGATTTTGGTGAATAGCCTTCCAACTGCCAAACTCACTGTCGAGTCAGTTGAGACAGTTAACCATCTCATTTCTTGCACCATCCAGAAGATCAAAACTGCCCTTCAAGTATCGTAA 2466 44.53 MPGGAITDPSFLPYPIPSSMPSSSEFSSSLRKMDGYGEVCLLGDGFDPTGIVRIREDEYDSRSGSDNIDGAVSGDDHDANDEQPPKRKKYHRHTPHQIQELEIFFKECPHPDDKQRNELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISNPTCSTCGGPSIPVHLSFEEHQLRIENARLREELHRLYAVTNKFLGWPVVPFANHGSSPSSESCLELSVGRNGPGNLSTVSDSMGLNLGNELFSAGPVMPISKPDIGMLSNDIPLERTIYVDLALAAMNELIKMAQMDGPLWIRSRDDSGKETLNLDEYSRTFPSSAGMKHTNWTTEATRDTTMVIINSLALVETLMDANRWAEMFPCLIARATTIDVISSGMGGTRNGALQLVSLYAFPSPDINMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSIGEGSNSNSFFGCKRLPSGCVVQDMPNGFSKVTWVEHTEYDETVIHQLYRQLISSGSGFGSQRWLATLQRQCDCLAILMSSTIPTEDPAGLDVSRYSILVQCVFAFRFLHVSFKTGISPSGRRSMLKLSQRMVDNFCSGVCSSTLHKWDKLVVGNISEDVKVMARKSINNPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNSRPTLEMLRISKGQGPDNRVSLLCANPMNANENTMFILQETWTDVSGSLVVFAPVDTSSVNLVMRGGDSAYVSLLPSGFAILPIDQSNYACTNGEDASVKSSINSGHGGACLLTVAFQILVNSLPTAKLTVESVETVNHLISCTIQKIKTALQVS* 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6797959 6802779 + Chy6G114530.1 Chy06g00925 228634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00925 821 Gene3D - 73 160 - -
Chy06g00925 821 ProSiteProfiles START domain profile. 285 531 IPR002913 GO:0008289
Chy06g00925 821 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Chy06g00925 821 MobiDBLite consensus disorder prediction 56 94 - -
Chy06g00925 821 SMART START_1 294 528 IPR002913 GO:0008289
Chy06g00925 821 Pfam START domain 295 527 IPR002913 GO:0008289
Chy06g00925 821 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Chy06g00925 821 Coils Coil 138 170 - -
Chy06g00925 821 SUPERFAMILY Bet v1-like 582 815 - -
Chy06g00925 821 SUPERFAMILY Homeodomain-like 71 144 IPR009057 -
Chy06g00925 821 SMART HOX_1 86 148 IPR001356 GO:0003677
Chy06g00925 821 SUPERFAMILY Bet v1-like 286 528 - -
Chy06g00925 821 CDD homeodomain 87 144 IPR001356 GO:0003677
Chy06g00925 821 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 42 546 IPR042160 -
Chy06g00925 821 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 569 819 IPR042160 -
Chy06g00925 821 MobiDBLite consensus disorder prediction 71 88 - -
Chy06g00925 821 CDD START_ArGLABRA2_like 294 526 - -
Chy06g00925 821 Pfam Homeodomain 87 142 IPR001356 GO:0003677
Chy06g00925 821 MobiDBLite consensus disorder prediction 1 29 - -
Chy06g00925 821 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 569 819 - -
Chy06g00925 821 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 42 546 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00925 Chy-Chr6:6797959 Chy11g00599 Chy-Chr11:6948159 0 dispersed
Chy11g02014 Chy-Chr11:25991815 Chy06g00925 Chy-Chr6:6797959 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18152 PF01852 START 1.30E-42 CL0209 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00925 K09338 - csv:101218216 1505.73