Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00929 ATGGGTATGGAGTTGAAACGCTTCTTTTTTATTTTCATCATCTGCTTCGACCTCTGCATTTTGAGTTCCAATGGCGCTACAGTCCAGAATGAGATTATTATCGAGAGAGAAAGCTTGGTTTCTTTCAAAGCTTCCTTGGAAACCTTTGAAATTCTGCCATGGAACTCATCGGTTCCTCACTGCTTTTGGGTCGGAGTTTTTTGTCGACTCGGTCGTGTTACAGAGCTCTCTCTTTCGTCTCTTTCACTCAAAGGCCAACTATCTCGGTCCCTTTTCAATCTTTTGAGCCTCTCTGTTCTTGACCTTTCAAACAACTTACTCTATGGCTCAATACCACCTCAGATATCTAATCTTCGGAGCTTGAAGGTTCTCGCTCTCGGTGAAAATCAGTTTTCCGGCGACTTCCCTATCGAGCTCACTGAGTTGACTCAACTGGAGAATCTCAAGTTGGGGGCTAATTTATTCTCAGGTAAAATCCCGCCGGAGCTTGGAAATTTGAAGCAGTTACGGACCCTTGACCTCTCCAGCAATGCCTTCGTCGGAAATGTTCCGCCCCACATCGGAAACTTGACGAAGATTTTATCCTTGGACCTCGGCAACAATCTTTTATCAGGTTCACTCCCATTGACCATCTTTACTCAGCTTACATCTTTAACTTCTCTGGACATTTCAAACAACTCCTTTTCGGGTTCAATCCCACCTGAAATTGGTAATCTAAATCATTTGGCTGGCCTTTATATCGGCATTAACCATTTTTCCGGTGAGTTGCCTCCTGAAGTTGGTAACCTTGTATTGCTGGAGAACTTTTTTTCGCCGTCTTGTTCTCTAACTGGTCCATTGCCTGATGAACTATCCAAGCTGAAATCATTGAGCAAACTGGATCTTTCATACAACCCACTTGGGTGTTCAATCCCGAAAACGATTGGTGAATTGCAGAACTTGACTATATTGAATTTGGTTTACACTGAGCTTAATGGTTCTATTCCTGCTGAGCTTGGGAGGTGTAGAAATTTGAAAACATTGATGCTTTCGTTCAACTATCTATCTGGGGTGTTGCCACCAGAGCTTTCCGAGCTTTCCATGTTGACATTTTCCGCTGAGAGGAATCAGCTTTCTGGGCCATTACCTTCTTGGTTTGGCAAATGGGATCATGTCGATTCTATTTTACTTTCGAGTAATCGATTTACTGGCGAAATCCCACCTGAGATTGGAAATTGTTCGAAGCTTAATCACCTTAGTTTGAGCAATAACTTGTTGACAGGTCCAATACCTAAAGAAATATGTAACGCTGCATCCTTGATGGAGATTGATCTTGACAGTAATTTCCTTTCGGGTACTATTGATGACACATTTGTGATGTGTAAAAACCTTACACAGTTGGTTTTGGTAGACAATCAGATCGTCGGTGCAATACCGGAGTACTTCTCAGACCTTCCCCTACTGGTTATCAACCTTGATGCCAACAATTTTACAGGTTCTTTACCAAGAAGTATATGGAAGTCAGTGGATTTGATGGAATTTTCCGCTGCAAATAACCAGTTAGAGGATCATCTCCCTCCAGAAATTGGTTATGCAGCTTCCCTTGAGAGGCTTGTCCTCAGCAACAACAGGTTGACAGGCATAATACCAGATGAAATTGGAAATCTCACAGCCCTTTCTGTTCTAAATTTGAATTCAAATCTGCTCGAAGGAACTATTCCTGCCATGCTTGGAGATTGCAGTGCACTTACCACATTAGACCTTGGAAACAACAGTTTAAACGGATCGATTCCAGAAAAACTTGCAGACCTTTCTGAATTACAGTGCTTAGTTCTTTCGCACAACAATTTATCTGGAGCAATACCATCCAAGCCATCAGCTTATTTTCGACAGTTGACCATTCCTGATTTGAGCTTTGTTCAGCATCATGGAGTTTTCGATCTGTCTCATAATAGATTGTCCGGTACCATACCTGATGAACTGGGGAACTGTGTTGTAGTGGTGGATCTTTTACTCAACAATAATCTACTTTCAGGAGCAATACCTAGTTCTCTCTCTCAGTTAACAAACCTCACAACCTTGGATTTATCTAGCAATACGCTTACTGGTCCTATTCCTGCAGAAATTGGCAAGGCACTCAAGCTTCAAGGCTTGTATCTTGGGAATAATCGCCTTATGGGAATGATCCCAGAAAGCTTCAGTCATTTGAATAGCTTGGTAAAGTTGAACTTAACTGGTAATAGGTTGTCTGGTTCGGTTCCAAAAACGTTTGGTGGTCTGAAAGCTCTAACTCATTTGGATTTAAGTTGTAATGAGTTGGATGGTGATCTTCCTTCTTCTCTGTCCAGCATGTTGAATCTTGTCGGGCTTTATGTACAGGAGAACAGGCTTTCTGGTCAGGTTGTTGAACTTTTCCCAAGTTCCATGTCATGGAAGATTGAAACTTTGAATTTGAGTGATAATTATTTAGAGGGTGTACTTCCACGAACATTGGGCAACCTATCATACTTGACGACTTTGGATCTTCACGGAAATAAGTTCGCAGGGACAATCCCTTCAGATCTTGGGGATCTTATGCAACTTGAATACTTAGATGTCTCGAACAACAGCCTTTCAGGGGAGATTCCAGAGAAAATATGCAGCCTCGTCAATATGTTTTACCTGAATTTGGCTGAAAATAGTCTTGAAGGTTCAATTCCGAGAAGTGGGATTTGCCAGAATCTATCCAAAAGTTCACTTGTCGGTAACAAGGATCTTTGTGGGAGAATCCTGGGTTTGAATTGCCGGATCAAAAGCTTAGAGAGATCTGCAGTCTTAAATTCTTGGAGTGTTGCTGGGATTATCATTGTTAGCGTTCTTATCGTTCTAACTGTGGCATTCGCAATGCGAAGACGGATCATTAGAAGCCAGAGAGATAGTGATCCAGAGGAAATGGAGGAAAGCAAATTAAACAGTTTCATAGACCCCAATCTCTATTTCTTAAGCAGCAGCAGATCAAAAGAGCCTTTAAGCATCAATGTGGCTATGTTCGAGCAGCCCCTTCTGAAGTTAACTTTGGTATTGAAATTTCTTAAAGGGATCAAAGATGAGTAA 3072 41.73 MGMELKRFFFIFIICFDLCILSSNGATVQNEIIIERESLVSFKASLETFEILPWNSSVPHCFWVGVFCRLGRVTELSLSSLSLKGQLSRSLFNLLSLSVLDLSNNLLYGSIPPQISNLRSLKVLALGENQFSGDFPIELTELTQLENLKLGANLFSGKIPPELGNLKQLRTLDLSSNAFVGNVPPHIGNLTKILSLDLGNNLLSGSLPLTIFTQLTSLTSLDISNNSFSGSIPPEIGNLNHLAGLYIGINHFSGELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKTIGELQNLTILNLVYTELNGSIPAELGRCRNLKTLMLSFNYLSGVLPPELSELSMLTFSAERNQLSGPLPSWFGKWDHVDSILLSSNRFTGEIPPEIGNCSKLNHLSLSNNLLTGPIPKEICNAASLMEIDLDSNFLSGTIDDTFVMCKNLTQLVLVDNQIVGAIPEYFSDLPLLVINLDANNFTGSLPRSIWKSVDLMEFSAANNQLEDHLPPEIGYAASLERLVLSNNRLTGIIPDEIGNLTALSVLNLNSNLLEGTIPAMLGDCSALTTLDLGNNSLNGSIPEKLADLSELQCLVLSHNNLSGAIPSKPSAYFRQLTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNLLSGAIPSSLSQLTNLTTLDLSSNTLTGPIPAEIGKALKLQGLYLGNNRLMGMIPESFSHLNSLVKLNLTGNRLSGSVPKTFGGLKALTHLDLSCNELDGDLPSSLSSMLNLVGLYVQENRLSGQVVELFPSSMSWKIETLNLSDNYLEGVLPRTLGNLSYLTTLDLHGNKFAGTIPSDLGDLMQLEYLDVSNNSLSGEIPEKICSLVNMFYLNLAENSLEGSIPRSGICQNLSKSSLVGNKDLCGRILGLNCRIKSLERSAVLNSWSVAGIIIVSVLIVLTVAFAMRRRIIRSQRDSDPEEMEESKLNSFIDPNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVLKFLKGIKDE* 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6834654 6838556 + Chy6G114570.1 Chy06g00929 228638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00929 1023 Pfam Leucine Rich Repeat 853 875 IPR001611 GO:0005515
Chy06g00929 1023 Pfam Leucine Rich Repeat 805 827 IPR001611 GO:0005515
Chy06g00929 1023 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515
Chy06g00929 1023 Pfam Leucine Rich Repeat 290 310 IPR001611 GO:0005515
Chy06g00929 1023 Pfam Leucine Rich Repeat 527 549 IPR001611 GO:0005515
Chy06g00929 1023 PANTHER UNNAMED PRODUCT 139 637 - -
Chy06g00929 1023 PANTHER UNNAMED PRODUCT 10 363 - -
Chy06g00929 1023 PANTHER UNNAMED PRODUCT 799 954 - -
Chy06g00929 1023 PANTHER UNNAMED PRODUCT 638 796 - -
Chy06g00929 1023 SUPERFAMILY L domain-like 48 363 - -
Chy06g00929 1023 Gene3D Ribonuclease Inhibitor 141 212 IPR032675 -
Chy06g00929 1023 SMART LRR_sd22_2 287 313 - -
Chy06g00929 1023 SMART LRR_sd22_2 94 120 - -
Chy06g00929 1023 SMART LRR_sd22_2 753 782 - -
Chy06g00929 1023 SMART LRR_sd22_2 573 599 - -
Chy06g00929 1023 SMART LRR_sd22_2 406 432 - -
Chy06g00929 1023 SMART LRR_sd22_2 681 713 - -
Chy06g00929 1023 SMART LRR_sd22_2 454 480 - -
Chy06g00929 1023 SMART LRR_sd22_2 851 877 - -
Chy06g00929 1023 SMART LRR_sd22_2 215 241 - -
Chy06g00929 1023 SMART LRR_sd22_2 166 192 - -
Chy06g00929 1023 PRINTS Leucine-rich repeat signature 681 694 - -
Chy06g00929 1023 PRINTS Leucine-rich repeat signature 218 231 - -
Chy06g00929 1023 SUPERFAMILY L domain-like 367 632 - -
Chy06g00929 1023 SMART LRR_typ_2 875 900 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 526 548 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 681 705 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 827 851 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 287 311 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 753 777 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 597 623 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 190 214 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 729 752 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 166 189 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 549 573 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 215 239 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 707 728 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 335 359 IPR003591 -
Chy06g00929 1023 SMART LRR_typ_2 94 118 IPR003591 -
Chy06g00929 1023 Gene3D Ribonuclease Inhibitor 625 924 IPR032675 -
Chy06g00929 1023 Gene3D Ribonuclease Inhibitor 213 363 IPR032675 -
Chy06g00929 1023 SUPERFAMILY L domain-like 624 914 - -
Chy06g00929 1023 Gene3D Ribonuclease Inhibitor 429 503 IPR032675 -
Chy06g00929 1023 Gene3D Ribonuclease Inhibitor 364 428 IPR032675 -
Chy06g00929 1023 Gene3D Ribonuclease Inhibitor 34 140 IPR032675 -
Chy06g00929 1023 Gene3D Ribonuclease Inhibitor 504 624 IPR032675 -
Chy06g00929 1023 Pfam Leucine rich repeat 552 610 IPR001611 GO:0005515
Chy06g00929 1023 Pfam Leucine rich repeat 732 790 IPR001611 GO:0005515
Chy06g00929 1023 Pfam Leucine rich repeat 432 490 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00929 - - - csv:101215443 1818.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00929 Chy-Chr6:6834654 Chy12g01257 Chy-Chr12:17179541 6.17E-140 dispersed
Chy06g00929 Chy-Chr6:6834654 Chy02g00590 Chy-Chr2:3585818 5.84E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g619 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe09g00101 . . . . . . . . . . . . . . . . . Chy06g00929 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00929 Chy_Chr06 FPKM 0.903414 1.164913 0.997894 1.020345 3.291497 3.579903 3.202954 2.389898 2.977837 2.022984