Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00938 ATGGGGAAACAGAAGCAACAAGTGATCTCTCGATTCTTTGCTCCAAAACCCAAGTCCCCATCTCTTTCTTCTTCTTCTTCCTCCTCTGCCACCGCCGCCGACATAACTCCGCCGACCCAACCGTTTTCACCTGCTAAGGTATCGGCTACAGTCACTTTCTCCCCTTCCAAACGCCTCATTTCTTCTGCCATCGCCTCTCAGTTAACACCGCCCAAATCCTCTAAACGCCCAAAACTCTCGCCTCATACCCACAACCGTCTACCTTCCATCCCCAATCCCTCACTTCACCAAAGATTTCTCGACAAGTTCCTTGAACCCACCGATGACTCTTTCCAACCTTCTAATCAAAACCCCAGAACCTCCAATGGTGCTGATCCCAAATACAAATACACCCCTTTGGAACAACAGGTTGTGGACCTTAAGAAGAGGTACCCTGATGTTCTTCTCATGGTGGAGGTTGGTTATAGATACAGATTTTTTGGCCAAGATGCTGTAATAGCGGCTTGTGTTTTGGGTATTTATGCTCATTTGGATCATAATTTTATGACTGCGAGTATACCCACGTTTAGATTGAATGTGCACGTGAGAAGGCTGGTTAGTGCAGGGTATAAGGTGGGTGTTGTCAAGCAAACTGAAACTGCTGCGATGAAGGCTCATGGGTCGAATAAGTTGGGCCCGTTTTGTAGGGGATTATCGGCTTTGTATACTAAAGCAACATTGGAGGCAGGACAGGATTTAGGGGGAGCTGAAGAGGGATGTGCTGGGGAGAGTAATTACTTGTTCTGTTTGGTTGAAAATAGTATGTCGGTGGAAAATTTGGACTGTATAATCGAAAATGGGGTTGATGTGAAAATTGGGATGGTTGCCATGGAGATATCAACTGGGGATGTTATTTATGGGGAATATGACGATAACTTTATGAGAGATGGACTTGAGGCAATGCTCTTGAGCCTGTCTCCTGCTGAGTTACTTCTTGGAGATCCCATATCAAAGCCAACAGAGAAGTTATTGCTAGGTTATGCTGGACCTGCTTCGAATGTCCGTGTGGAGCATGTATCGGGAGATTGCTTTAAAGATGGCAGTGCACTTGCTGAAGTGATGTCTTTGTATGAAAACATTGACCAAAATAACTTCACTGAAGATAACAACCCTGAAAAAGTGTTGGTTGGACAAAAAAGTAACCGCCCAGCAATTAAGGAAATGGTGAACATGCCAAATTTAGCTCTTCAAGCATTGGCCTTAACCATTCGTCACTTAAAGCAATTTGGTTTAGAAAGGATTGTGTCTTTGGCATCTTCTTTTAGGCCATTCTCATGCAAAATGGAGATGACCCTCTCAGGCAATACGCTTACACAACTCGAGGTTTTGAAGAATAATGATGATGGTTCTGAAACTGGATCTTTATTACATTGCATGAATCATACTCTTACAATATTTGGCTCAAGGCTTCTTCGCCAATGGATAACACATCCTTTATGTGATAGAAACATGATAATTGCTCGTCAAGAGGCTGTTTCTGAGATTGCTGCATCTATGGTATCTTCAAAAGTATCTCCAAATAACAGAGCGTTGGATGAAGAAGATTCTGATGTCATTGTCATTGAACCAGAATTGAATTACATACTTTCTTCTGTGTTGACAACCTTGGGAAGGGCACCAGATATTCAGCGTGGAATAACAAGAATCTTTCACCGAACAGCATCCCCATCAGAGTTCATTGCAGTTATTCAAGCTATTTTATTTGCGGGAAAACAGCTTCAGCAGTTTCACATTGATGAAGAAGATGACAATTGTTCCAGTGAAAGTATTACTGGCTCCAAGCTCCTAAGAAAGCTGATTTTATCTGCTTCTTCCTCTGGTTTAATAAACATTGCTGCAAAGCTTTTGTCAACGATCAGCAAAGAAGCTGCAGATCAAGGGGACTTTCCAAACCTAATGATCATCTACAGTGACCAGTTTCCAAAGGTTGCTAGAGCTCGGAAGGAGGCTCAATCTGCAAGAGAGAAATTGGATGCTCTGATCACCTTCTACCGCAAGCAGCTTGGAATGCGGAAGTTGGAGTTCACTAGTGTGTCTGGAACTACGCATTTGATTGAGCTAGCCATAGATGTAAAGGTGCCTTCACAGTGGGTTAAGATCAATAGTACCAAGAAAACTGTAAGGTATCACCCACCTGAAGTATTGGCTGCGTTAGATGAGCTATCACTGGCAAATGAAGAGCTCATGGTTGCGTCTCGTGATGCTTGGGATGACTTTCTGAGAGGATTCAGCATATATTATGCAGAGTTTCAAGCTGCTGTTCAAGCATTGGCTTCCATAGACTGTCTCTATTCGTTAGCAATCCTCTCAAGAAATAAGAACTATGCTCGCCCAGAGTTTGTACATGATGATGAACCTGCTCAGATACATATATGTTCTGGACGCCATCCGGTTTTGGAAGGTACATTACAAGGCAATTTTGTCCCAAACGATACAAATTTGGACGCGAATGGAGAGCATTGTCAAATTGTAACAGGACCGAACATGGGTGGAAAAAGTTGCTACATTCGACAAGTTGCTCTCATTGCTCTAATGTCTCAGGTGGGTTCCTTTGTACCAGCATTCTCTGCAAAACTTCATGTCCTGGACGGTATATACACTCGAATGGGTGCTTCTGACAGTATTCAACAAGGTAGAAGCACCTTCTTAGAAGAAATGACTGAGACTTCACATATACTCCGTCATTCCTCATCACGTTCCTTGGTCATAATTGATGAACTTGGGAGAGGTACAAGCACCCACGATGGTGTGGCCATTGCATATGCAGCTCTGCATAATCTACTCCAGCAGAAGAAATGTTTGGTTCTCTTTGTCACCCACTATCCCAAAGTTGCTGAGATTGCAAAGGAATTCCCAGCATCTGCGGGGGTATACCATGTTTCATATCTTACATCACACAAAAAGTCAGGCCCAAAATCAACTGAGGATGTGACTTACTTGTATAAGCTCATTCCTGGTGTTGCGGAGAGTAGTTTTGGTTTCAAAGTAGCACAACTTGCACAGATACCTTTATCGTGTATTGCACGGGCCACAGAAATGGGGGTCTGGTTGGAAGAAATAGTAACAAGAAGAGCACAGCGCAAATCCACAGAACAACATTTGGTAGAAGCATCAGTTAAGGGGTTGGAATGGCAAAGCTTCCAGTCCTTCCTCGAGAGAATTGATGGTTATGAGGAATTCTTTCTGTTCTTGAAAGCTACACTACGTTCTGCTGATGTGGGAACATGGTGCCATCAAATTTACCAAGCTAGAAGCATGGCCATGGACTTGTTAGGAAGGTAA 3321 43.27 MGKQKQQVISRFFAPKPKSPSLSSSSSSSATAADITPPTQPFSPAKVSATVTFSPSKRLISSAIASQLTPPKSSKRPKLSPHTHNRLPSIPNPSLHQRFLDKFLEPTDDSFQPSNQNPRTSNGADPKYKYTPLEQQVVDLKKRYPDVLLMVEVGYRYRFFGQDAVIAACVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAMKAHGSNKLGPFCRGLSALYTKATLEAGQDLGGAEEGCAGESNYLFCLVENSMSVENLDCIIENGVDVKIGMVAMEISTGDVIYGEYDDNFMRDGLEAMLLSLSPAELLLGDPISKPTEKLLLGYAGPASNVRVEHVSGDCFKDGSALAEVMSLYENIDQNNFTEDNNPEKVLVGQKSNRPAIKEMVNMPNLALQALALTIRHLKQFGLERIVSLASSFRPFSCKMEMTLSGNTLTQLEVLKNNDDGSETGSLLHCMNHTLTIFGSRLLRQWITHPLCDRNMIIARQEAVSEIAASMVSSKVSPNNRALDEEDSDVIVIEPELNYILSSVLTTLGRAPDIQRGITRIFHRTASPSEFIAVIQAILFAGKQLQQFHIDEEDDNCSSESITGSKLLRKLILSASSSGLINIAAKLLSTISKEAADQGDFPNLMIIYSDQFPKVARARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSIYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVHDDEPAQIHICSGRHPVLEGTLQGNFVPNDTNLDANGEHCQIVTGPNMGGKSCYIRQVALIALMSQVGSFVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETSHILRHSSSRSLVIIDELGRGTSTHDGVAIAYAALHNLLQQKKCLVLFVTHYPKVAEIAKEFPASAGVYHVSYLTSHKKSGPKSTEDVTYLYKLIPGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLVEASVKGLEWQSFQSFLERIDGYEEFFLFLKATLRSADVGTWCHQIYQARSMAMDLLGR* 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6884870 6891753 - Chy6G114660.1 Chy06g00938 228647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00938 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 1027 IPR027417 -
Chy06g00938 1106 MobiDBLite consensus disorder prediction 62 94 - -
Chy06g00938 1106 MobiDBLite consensus disorder prediction 108 124 - -
Chy06g00938 1106 MobiDBLite consensus disorder prediction 1 48 - -
Chy06g00938 1106 PIRSF Msh6 124 1079 IPR017261 GO:0006298|GO:0030983
Chy06g00938 1106 SUPERFAMILY DNA repair protein MutS, domain II 256 383 IPR036678 GO:0005524|GO:0006298|GO:0030983
Chy06g00938 1106 Pfam MutS domain II 275 425 IPR007860 GO:0005524|GO:0006298|GO:0030983
Chy06g00938 1106 Gene3D - 630 756 - -
Chy06g00938 1106 Gene3D - 445 780 - -
Chy06g00938 1106 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 105 1068 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Chy06g00938 1106 Gene3D MutS, connector domain 254 442 IPR036678 GO:0005524|GO:0006298|GO:0030983
Chy06g00938 1106 Gene3D - 788 1064 IPR027417 -
Chy06g00938 1106 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 105 1068 - -
Chy06g00938 1106 MobiDBLite consensus disorder prediction 17 48 - -
Chy06g00938 1106 Pfam MutS domain I 131 241 IPR007695 GO:0005524|GO:0006298|GO:0030983
Chy06g00938 1106 Pfam MutS domain III 448 780 IPR007696 GO:0005524|GO:0006298|GO:0030983
Chy06g00938 1106 MobiDBLite consensus disorder prediction 106 128 - -
Chy06g00938 1106 Pfam MutS domain V 835 1026 IPR000432 GO:0005524|GO:0006298|GO:0030983
Chy06g00938 1106 SUPERFAMILY DNA repair protein MutS, domain III 448 786 IPR036187 -
Chy06g00938 1106 SUPERFAMILY DNA repair protein MutS, domain I 126 239 IPR016151 GO:0005524|GO:0006298|GO:0030983
Chy06g00938 1106 ProSitePatterns DNA mismatch repair proteins mutS family signature. 913 929 IPR000432 GO:0005524|GO:0006298|GO:0030983
Chy06g00938 1106 SMART mutATP5 832 1028 IPR000432 GO:0005524|GO:0006298|GO:0030983
Chy06g00938 1106 SMART DNAend 463 815 IPR007696 GO:0005524|GO:0006298|GO:0030983
Chy06g00938 1106 Gene3D DNA repair protein MutS, domain I 120 247 IPR016151 GO:0005524|GO:0006298|GO:0030983
Chy06g00938 1106 MobiDBLite consensus disorder prediction 62 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00938 K08736 MSH3; DNA mismatch repair protein MSH3 - csv:101214720 2055.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01751 Chy-Chr1:23236639 Chy06g00938 Chy-Chr6:6884870 9.50E-83 transposed
Chy02g02380 Chy-Chr2:27627429 Chy06g00938 Chy-Chr6:6884870 9.99E-57 transposed
Chy05g01362 Chy-Chr5:17753421 Chy06g00938 Chy-Chr6:6884870 1.16E-23 transposed
Chy06g00424 Chy-Chr6:2877060 Chy06g00938 Chy-Chr6:6884870 7.45E-20 transposed
Chy06g01861 Chy-Chr6:22489940 Chy06g00938 Chy-Chr6:6884870 6.40E-41 transposed
Chy07g00807 Chy-Chr7:9923305 Chy06g00938 Chy-Chr6:6884870 1.11E-13 transposed
Chy12g00941 Chy-Chr12:14750869 Chy06g00938 Chy-Chr6:6884870 2.37E-15 transposed
Chy06g00938 Chy-Chr6:6884870 Chy09g01070 Chy-Chr9:13084348 1.63E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00938 Chy_Chr06 FPKM 7.936666 13.238871 7.836766 6.103436 27.527754 27.080288 26.882507 2.695799 6.790511 3.378237