Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00944 ATGGCCTCCGATGAGCCCAAGCAAATAGAGTCTGAAGAATCTCCCTCAGAGCTCCCTCCCCCTCCCCCGGCTGTGGCTGAGCCAACCAAAGACGACGTCGCAGAGGAGAAATCAATTATCCCCTTACTCCCACCGGAGGACGAGAAGCCCGCCGATGACTCCAAAGCTCTAGCAATCGTTGAAAAGAGTGATGAAAAAGCAGAGGAAAAAGAGAAAGATAGTGAAGGCTCAATTAATAGAGATGCTGTACTTGCAAGAGTGGCAACAGAGAAGAGATTGTCACTCATCAAAGCTTGGGAAGAGAGTGAAAAATCAAAGGCAGAGAATAGAGCTCACAAAAAGCTATCAGCAATTGGGTCATGGGAGAACAGCAAGAAAGCAGCTGTTGAGGCTGAACTAAAACAGATTGAGGAAAAATTTGAGAAGAAAAAGGGAGAGTATATAGAGAAAATGAAGAACAAAATAGCATTGATACACAAAACAGCAGAAGAAAAGAAGGCTGTTATTGAAGCAAAGCGTGGAGAAGAAAAGCTGAAGGCAGAGGAAATTGCTGCCAAACACAGAGCCACTGGAACGGCTCCTAAGAAGATTTTCGGTTGTTTCTAA 606 44.72 MASDEPKQIESEESPSELPPPPPAVAEPTKDDVAEEKSIIPLLPPEDEKPADDSKALAIVEKSDEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGSWENSKKAAVEAELKQIEEKFEKKKGEYIEKMKNKIALIHKTAEEKKAVIEAKRGEEKLKAEEIAAKHRATGTAPKKIFGCF* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6913030 6914930 - Chy6G114720.1 Chy06g00944 228653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00944 201 MobiDBLite consensus disorder prediction 29 79 - -
Chy06g00944 201 Pfam Remorin, N-terminal region 31 87 IPR005518 -
Chy06g00944 201 Coils Coil 126 146 - -
Chy06g00944 201 MobiDBLite consensus disorder prediction 1 80 - -
Chy06g00944 201 PANTHER OS02G0117200 PROTEIN 1 201 - -
Chy06g00944 201 PANTHER REMORIN 1.4 1 201 - -
Chy06g00944 201 Pfam Remorin, C-terminal region 91 196 IPR005516 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00944 - - - csv:101216648 317.775
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g00944 Chy09g01204 CCT
Chy06g00944 Chy09g01204 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00944 Chy-Chr6:6913030 Chy10g00048 Chy-Chr10:1201269 6.58E-09 dispersed
Chy06g00944 Chy-Chr6:6913030 Chy06g00945 Chy-Chr6:6916860 2.11E-24 tandem
Chy04g00008 Chy-Chr4:120431 Chy06g00944 Chy-Chr6:6913030 5.24E-75 transposed
Chy05g00592 Chy-Chr5:6874819 Chy06g00944 Chy-Chr6:6913030 6.70E-26 transposed
Chy06g00182 Chy-Chr6:1185663 Chy06g00944 Chy-Chr6:6913030 1.40E-52 wgd
Chy06g00944 Chy-Chr6:6913030 Chy09g01204 Chy-Chr9:14186818 9.83E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g661 Blo06g01117 . Bda05g00072 . Bpe03g00289 . . Bma14g02086 . Cmo18g01268 Cma02g01062 . Car02g00805 . . Cpe05g00657 . Bhi01g01322 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Cone1ag1155 Cone5ag0865 Cone14ag0091 Cone15ag0097 Lsi05g01228 Csa05g00303 Chy09g01204 Cme06g00994 Blo07g00413 Blo09g00109 . . . Bpe12g00425 Bma08g00336 . . Cmo02g01079 . . Cma18g01245 . Car18g01151 Cpe09g00093 . Bhi12g00225 . . Lac11g2116 Hepe06g1565 . Lcy12g1673 Cla05g00878 Cam05g0966 Cec05g0970 Cco05g0970 Clacu05g0954 Cmu05g0910 Cre05g0994 . . Chy06g00944 Cme09g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000535 3 7 5 4 4 3 4 3 2 3 3 3 4 3 3 4 3 7 3 3 2 3 3 3 3 3 3 6 4 3 107
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00944 Chy_Chr06 FPKM 125.467361 126.762192 10.616611 10.352065 1.310036 1.784117 1.064759 28.963247 32.20755 32.72908
Chy06g00944 Chy_Chr00 FPKM 136.197372 139.711487 9.436471 8.783673 1.230798 2.275143 1.93672 37.104443 40.394226 41.245667