Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00946 ATGAACTCTTTATCGCTTGTGAGTTCGCGGATAGTCTGCAGATTATTTTCAACTTCTTTTATTGTGCGTCGAACAATTTGGAATCGAAACTTTTGCAGTGACGATCGGTTTCAGTTTGTTGTGGAACCCTTTAGTTACTTAGCTGATGGGAACTCAGATTCTTTTGAGACTGATAGTCGTAGATGGGATGATTTTTCATTGAGAAGGAGTTTTCTAAAGGATGCGAAAATTGATGCTGAGAAAGTTATTGAAATTCTTAAACAGGATGGCCCTGGATTTGACACATTTTTGGCTTTAGATGAACTGCAATTAAAGGTCTCAGGGGTGCTTGTTGGAGAAGTTCTGAAGGGGATTTTGAAAAGTAAAAGTGTTCTAAACAAAACTCAGTGTGCAAAATTGGGGTACAAGTTTTTCATATGGAGCAGTAGGATCGAGAATTATAGACACACTGTGAATTCATATCATATAATCATGAAAATATTTGCTGAGTGTGAGGAGTTCAAGGCTATGTGGAGGCTACTAGACGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTATGATATTGATATGTACTTGTGGTGAGGCAGGCTTGGCTAAGAGAGTTGTTGAAAGGTTTATAAAATCAAAAACATTCAATTTCAGGCCGTATAAACATTCTTATAATGCCATTCTTCATGGACTACTTATTGTAAAACAGTACAAGTTGATTGAATGGGTGTATGATCAAATGCTGCTTGATGATCATAGCCCAGACATTCTTACATATAATGTGTTATTGTTTTCAAGCTGCAAATTGGGGAAATTGGATCAGTTTCACAGATTGCTTGATGAAATGGCCAGGAAAGGGTTTTCCCCTGATTTTCATACTTATAACATTCTTCTTTATGTTCTTGGCAAAGGAGACAAACCCCTTGCAGCTCTAAATCTTTTGAACCACATGAGGGAAGTGGGCTTTGGTCCCAACGTTCTTCACTTCACAACGCTTATAAATGGACTTAGTCGGGCTGGAAATTTGGATGCTTGCAAATATTTTTTCGATGAACTAGGAAACAATGGTTGCATTCCTGACGTTGTTTGCTACACTGTGATGATCACAAGCTATACAGAGGCTGGGCAGCACGAGAAAGCTAGGGCATTTTTTGATGAGATGATAATGAAGGGCCAGCTTCCTAATGTGTTTACGTACAACTCCATGATTCGTGGTTTTTGTATGGTGGGTAAGTTCAAGGAAGCTTCCTCTATGCTCTCTGAAATGGAATCCCGAGGTTGCAGACCAAATTTTCTTGTATATAGTACCCTTGTAAGTTATTTGCGAAATGCAGGCAAGCTTGGCGAGGCTCACAAAGTTATAAAGCGAATGGTTGAGAATGGGCAATATGCCCACTTAATGACAAAATTCAAGGGATATAGGAGATGCTAG 1431 39.13 MNSLSLVSSRIVCRLFSTSFIVRRTIWNRNFCSDDRFQFVVEPFSYLADGNSDSFETDSRRWDDFSLRRSFLKDAKIDAEKVIEILKQDGPGFDTFLALDELQLKVSGVLVGEVLKGILKSKSVLNKTQCAKLGYKFFIWSSRIENYRHTVNSYHIIMKIFAECEEFKAMWRLLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKSKTFNFRPYKHSYNAILHGLLIVKQYKLIEWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSYTEAGQHEKARAFFDEMIMKGQLPNVFTYNSMIRGFCMVGKFKEASSMLSEMESRGCRPNFLVYSTLVSYLRNAGKLGEAHKVIKRMVENGQYAHLMTKFKGYRRC* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6922203 6923633 + Chy6G114740.1 Chy06g00946 228655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00946 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Chy06g00946 476 Pfam PPR repeat 329 357 IPR002885 -
Chy06g00946 476 Pfam PPR repeat 153 181 IPR002885 -
Chy06g00946 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Chy06g00946 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Chy06g00946 476 PANTHER OS10G0506000 PROTEIN 1 476 - -
Chy06g00946 476 Gene3D Tetratricopeptide repeat domain 248 318 IPR011990 GO:0005515
Chy06g00946 476 Gene3D Tetratricopeptide repeat domain 390 461 IPR011990 GO:0005515
Chy06g00946 476 Gene3D Tetratricopeptide repeat domain 319 389 IPR011990 GO:0005515
Chy06g00946 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Chy06g00946 476 Pfam PPR repeat family 359 407 IPR002885 -
Chy06g00946 476 Pfam PPR repeat family 254 300 IPR002885 -
Chy06g00946 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Chy06g00946 476 TIGRFAM PPR: pentatricopeptide repeat domain 329 361 IPR002885 -
Chy06g00946 476 TIGRFAM PPR: pentatricopeptide repeat domain 433 461 IPR002885 -
Chy06g00946 476 TIGRFAM PPR: pentatricopeptide repeat domain 362 396 IPR002885 -
Chy06g00946 476 TIGRFAM PPR: pentatricopeptide repeat domain 258 290 IPR002885 -
Chy06g00946 476 TIGRFAM PPR: pentatricopeptide repeat domain 153 185 IPR002885 -
Chy06g00946 476 TIGRFAM PPR: pentatricopeptide repeat domain 397 430 IPR002885 -
Chy06g00946 476 TIGRFAM PPR: pentatricopeptide repeat domain 292 326 IPR002885 -
Chy06g00946 476 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 476 - -
Chy06g00946 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Chy06g00946 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Chy06g00946 476 Pfam Pentatricopeptide repeat domain 418 461 IPR002885 -
Chy06g00946 476 Gene3D Tetratricopeptide repeat domain 117 238 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00946 - - - csv:101213031 954.896
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00946 Chy-Chr6:6922203 Chy10g00187 Chy-Chr10:4633168 2.58E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g666 . . Bda05g00073 . Bpe03g00288 . Bma10g01222 . Cmo16g00134 Cmo18g01269 . . . . Sed07g1105 . Cpe14g00109 Bhi01g01321 Tan01g0253 Cmetu06g1773 . Hepe07g0160 Mch10g0155 . . . . . . . . . . Cone14ag0088 Cone15ag0092 Lsi05g01227 . . . Blo07g00412 . . . . . . . . . . . Cma18g01246 Car16g00114 Car18g01152 Cpe09g00092 . . . . . . . . Cla05g00880 Cam05g0968 Cec05g0972 Cco05g0972 . Cmu05g0912 Cre05g0996 . Csa03g01710 Chy06g00946 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006768 1 1 1 1 1 1 2 1 1 1 1 0 2 0 1 2 1 2 2 1 1 1 1 2 2 2 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00946 Chy_Chr06 FPKM 53.945007 57.614971 48.875031 44.15522 50.24786 60.765858 52.724094 0.690542 0.841099 0.858706