Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00948 ATGGTGAACCAAAGGCAAAGACTTGCTCGGAAAAAGTACAGAGAAGAACACCCAGAACTTTTCCCGAAAGCAGAGCCAACGCCACCGAAAGACCCGGACAAGAAGAAGAAGAAGAGTAAATTCAAACGCAAAAAGGAAGAATCAAACTCAAACAGAGACCCAAATAAACCCCACAAAAAGGGTTTTAAGAAACACCCTCTTAGAGTACCTGGGATGAAGCCTGGAGAAAGCTGCTTCATCTGCAAAGCTAAAGACCACATTGCTAAGCTTTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGCCGAAGACGAGGGCACAGTCTCAAGAATTGTCCAGACAAAAATGAAGGGACCATGGATAAGAAGTTATGCTATAATTGTGGTGAAACAGGACATTCACTAGCTAATTGTCCACAACCCCTTCAAGATGGGGGAACTAAATTCGCCAGTTGTTTTATTTGTAATGAAAGTGGACACTTAAGCAAGAATTGTCCGAAGAATACTCACGGGATCTACCCTAAGGGTGGTTGTTGTAAAACTTGTGGAGAGGTCACACATTTAGCTAAGGATTGTCCAAAGAAAGGTACCCAAGTGTTTGATAGGGCTGGTGTATCTGGTTACAGATCATCTGGATACGTGGAAATGCCAAGACGACCAGAGACGAAGCTAATCAGTGGTGATGATCTTGAGGATGACTTCATGATTGATGAAGGTCGTTTGGAGATCAAAGATGCAAAAATGGGAAAGAAAAAGGGTCCTAAAGCGAACGCTGCTTCTGGAATGGCTGTAAGGGATGAATGCAAGCTGAAATTTTTGGAGTTAAAAACCAAGAGAAACTATCGGTTCATTATATTCAAGATTGAGAATCAAGAAGTTGTTGTGGAAAAACTCGGAAGCCCTGAAGAGACTTATGAGGATTTCTCTGCTGCTATTCCTGCTAATGAGTGTCGCTATGCTGTCTTTGATTTTGATTTCACCACCAATGAGAACTGCCAGAAAAGCAAGATTTTCTTCATTGCATGGTCCCCTGACACATCAAAAGTGAGAAATAAGATGGTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTACAAGCCACAGATCCTAGCGAAATGAGCTTCGACATAATCAAGGCTCGAGCTTTTTAA 1188 42.17 MVNQRQRLARKKYREEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPNKPHKKGFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNEGTMDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVSGYRSSGYVEMPRRPETKLISGDDLEDDFMIDEGRLEIKDAKMGKKKGPKANAASGMAVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPEETYEDFSAAIPANECRYAVFDFDFTTNENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF* 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6931495 6937403 - Chy6G114760.1 Chy06g00948 228657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00948 395 MobiDBLite consensus disorder prediction 8 34 - -
Chy06g00948 395 Pfam Zinc knuckle 156 171 IPR001878 GO:0003676|GO:0008270
Chy06g00948 395 Pfam Zinc knuckle 128 144 IPR001878 GO:0003676|GO:0008270
Chy06g00948 395 CDD ADF_cofilin_like 264 394 IPR017904 GO:0015629|GO:0030042
Chy06g00948 395 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 124 173 - -
Chy06g00948 395 SMART adf_2 270 395 IPR002108 GO:0003779
Chy06g00948 395 SUPERFAMILY Retrovirus zinc finger-like domains 122 172 IPR036875 GO:0003676|GO:0008270
Chy06g00948 395 MobiDBLite consensus disorder prediction 1 69 - -
Chy06g00948 395 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 259 395 - -
Chy06g00948 395 SMART c2hcfinal6 182 198 IPR001878 GO:0003676|GO:0008270
Chy06g00948 395 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
Chy06g00948 395 SMART c2hcfinal6 77 93 IPR001878 GO:0003676|GO:0008270
Chy06g00948 395 SMART c2hcfinal6 102 118 IPR001878 GO:0003676|GO:0008270
Chy06g00948 395 SMART c2hcfinal6 155 171 IPR001878 GO:0003676|GO:0008270
Chy06g00948 395 ProSiteProfiles Zinc finger CCHC-type profile. 183 198 IPR001878 GO:0003676|GO:0008270
Chy06g00948 395 Pfam Cofilin/tropomyosin-type actin-binding protein 272 392 IPR002108 GO:0003779
Chy06g00948 395 Gene3D - 71 124 - -
Chy06g00948 395 Gene3D - 125 152 - -
Chy06g00948 395 ProSiteProfiles Zinc finger CCHC-type profile. 129 144 IPR001878 GO:0003676|GO:0008270
Chy06g00948 395 SUPERFAMILY Retrovirus zinc finger-like domains 71 120 IPR036875 GO:0003676|GO:0008270
Chy06g00948 395 ProSiteProfiles Zinc finger CCHC-type profile. 156 171 IPR001878 GO:0003676|GO:0008270
Chy06g00948 395 SUPERFAMILY Actin depolymerizing proteins 258 393 - -
Chy06g00948 395 Gene3D - 153 207 - -
Chy06g00948 395 PANTHER COFILIN-RELATED 259 395 IPR017904 GO:0015629|GO:0030042
Chy06g00948 395 ProSiteProfiles ADF-H domain profile. 263 395 IPR002108 GO:0003779
Chy06g00948 395 PANTHER COFILIN-RELATED 124 173 IPR017904 GO:0015629|GO:0030042
Chy06g00948 395 Pfam Zinc knuckle 101 117 IPR025836 -
Chy06g00948 395 Pfam Zinc knuckle 182 198 IPR025836 -
Chy06g00948 395 Gene3D Severin 255 394 IPR029006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00948 - - - cmo:103484078 700.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00948 Chy-Chr6:6931495 Chy08g00774 Chy-Chr8:15415746 1.41E-76 dispersed
Chy02g02292 Chy-Chr2:26991076 Chy06g00948 Chy-Chr6:6931495 1.09E-09 transposed
Chy06g02232 Chy-Chr6:26439110 Chy06g00948 Chy-Chr6:6931495 6.58E-08 transposed
Chy06g00181 Chy-Chr6:1178544 Chy06g00948 Chy-Chr6:6931495 1.34E-78 wgd
Chy06g00948 Chy-Chr6:6931495 Chy09g01050 Chy-Chr9:12962176 5.94E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000141 6 14 5 5 6 6 11 5 5 6 6 6 12 6 6 9 6 7 12 5 7 7 6 5 7 5 5 13 9 5 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00948 Chy_Chr06 FPKM 2.236526 1.779105 4.686432 3.971238 4.634166 4.498867 4.66471 0.238369 0.158102 0.333938
Chy06g00948 Chy_Chr00 FPKM 1.82334 1.723218 3.87267 2.944463 4.114645 3.565656 3.141099 0.0 0.0 0.250395