Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00949 ATGGGGGGAATGGCTTATGCAGGGGACTCGAGAACAAGAGACAGCAACATGATCAAGTGCGAGAGTTTAGAGAAAAACAAGTGTGCATTTGCAGTTTCATGGTCCGGAAAAAGGTGTGTGCTTGAAAAGTCAGTGAAACGCAGCGGAGAAGAAGCATTCACATGTCGGACGTCCGAGATCGAGGCCGACCGATTACAGAACATCGTTGAAACGGAGGAGTGCGTTGAAGGTTGTGGAGTCGATAGGAACACTCTCGGCATCTCATCTGACTCCCTTCTAGACACTAGCTTCACTCGCAAACTTTGTTCCTCTCGTTGTTACAACCATTGTGCCAATGTTGTCGACCTCTTCTTCAACCTGGCCGCTGGAGAAGGTGTTTTTCTTCCAAAGTTGTGTGAAGTTCAAGGAGGAAATGTGAGAAGAGGAATGTCGGAGATTAGAAGCTCGGGGATTGTGGCACCGGGACCGATTCGACCAGTTTCTCTGTCTATTGCACCGGCAGTTGCACCAGGGCCGATTCAAGCGATCTCTTTATCAGCTGCTCCAGCAATGTCTCCCATGATGAGTGGAGCTTGA 576 49.31 MGGMAYAGDSRTRDSNMIKCESLEKNKCAFAVSWSGKRCVLEKSVKRSGEEAFTCRTSEIEADRLQNIVETEECVEGCGVDRNTLGISSDSLLDTSFTRKLCSSRCYNHCANVVDLFFNLAAGEGVFLPKLCEVQGGNVRRGMSEIRSSGIVAPGPIRPVSLSIAPAVAPGPIQAISLSAAPAMSPMMSGA* 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6946502 6947189 - Chy6G114770.1 Chy06g00949 228658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00949 191 Pfam PAR1 protein 18 170 IPR009489 -
Chy06g00949 191 PANTHER PAR1 PROTEIN 17 187 - -
Chy06g00949 191 PANTHER PAR1 PROTEIN 17 187 IPR009489 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00949 - - - csv:101216404 337.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02202 Chy-Chr4:26960005 Chy06g00949 Chy-Chr6:6946502 1.25E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g690 . . . . . . Bma10g01226 . . . . . . . . . . Bhi01g01318 . . . . Mch10g0152 . . . . . . . . Cone1ag1159 Cone5ag0869 . . . . . Cme06g01002 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01714 Chy06g00949 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003494 2 2 2 3 2 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 2 1 1 1 1 2 1 3 1 3 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00949 Chy_Chr06 FPKM 126.605133 129.540085 117.613091 124.449516 146.849579 151.611938 139.670258 165.048538 170.670685 168.13678
Chy06g00949 Chy_Chr00 FPKM 136.515793 137.552231 114.520615 115.252319 155.907135 157.108521 144.345856 172.013596 183.789474 173.830795