Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00971 ATGGCTATCTTCACATCCCTCTTTCTTCATTTTCTTTTTCTCTTCCTTCCTTTTCTTTCCGCTGATTTTGTTCCCTCTGACATTTTCCTTCTCAGCTGCGGCTCATCTTCCAATTCCTCTTTCTTTAATCGCATCTTCGTCGGCGATTCATTGAAACCCACCTCCGACTTTCTCGCCGCCGGTAAATCGGTGGCGCTTTCCGATCGAAACCCACCTCCGGATTCTCCTTCTTTGTATCACACAGCCAGAGTTTTCACCAGGGTCTCAAGCTACAAGTTCAACATCAAGAAGAACGGTACTCACTTGCTGCGGTTTCATCTTTCGCCATTTTCGTCGCCGGGTTTCGCTTTACATTCTGCAAATTTCACTATTTCGGCTAATGGGGTTTTTCTTTCTAGTATTTCTCACGTTAACGATTCTGTAATTAAAGAGTTTATGGTGAGAATTGACACCAACGTGCTTGAAATCGAGTTCCAACCAGCTTCGAGTTCGGGTTTTGGATTCGCGAATGCAATCGAGGTATTTTCAGCTCCTAAAGAACTCATTACCGATAATGGAGCTAAGCTTGTGGATTCTGATGGAGGTCGAGAATATTACAAACTCACATCGCAGATTTTGGAAACCAAATACAGAATTAACGTTGGGGGTCCCAAATTGACTCCATTCAACGACACTTTATGGAGAACTTGGGTGCCCGATGAGCCTTATCTAGCTTTAAAGTCGGCGGCAAAGCTCGCTTCAACTTTTCACACTCCGAACTATGAGCCCGGCGGCCCCACCAGGGAGGTCGCGCCGGACACCGTTTATATGACGGCGCAGCAGATGAACAAGGACAACTCAATTTCGGGTGCAAAATTTAACCTCACCTGGAACTTTCCATTGGATTCTAATGGCGTGAATCACTTGGTTCGCTTGCATTTCTGCGATATTGTTAGTTCCGCTCTTAATCAATTATATTTCAATGTGTATATCAATGGCTATCCCGCATATAGGGACTTGGATTTGTCATCTTTGTCCCTTCAGCTTTCAACTCCCTTTTATATTGATTTCATTGTGGATTCTGGTAGTTCTGGGGATATTCAAATTAGTGTTGGACCGTCTGATCTGAGCAGTTCTTTGAGATATAATGCGATCTTAAATGGAGCAGAGATCATGGAAATGGTGAACTCTAAGGATATGTTTACAGAAATTGAGAAAAGGAAAAGAAATTTGTGGGTTATTGTAGGTCCTGTTGTTGGTGGATTTATTGGTTTATGTTTGATTGTTGCTGCAATTGTTGCTTTCGGATGCAAGAGGAGGAAGAAACGGAAGCCAAAGCGGGCAGAGAGCGCAGGCTGGACTTCAGTTCAAGCGTATGGAGGAGGCAGTTCTGATAACGTGTATTCATTTGGAGTAGTACTCTTTGAAGTTCTTTGTGCTAGGCCTGCTGTTGATCCATTGCTTGCTAGGGAACAAGTAAATCTCGCCGAGTGGGCACTGCATTGGCAACGAAAAGGGATGCTTGAAAAGATTGTGGATCCACATTTGGTCGGGCAAATTAATCCGAATTCATTAAAGAAATATGGAGAAACAGCAGAAAAATGTTTGGCTGACTATGGTATTGACAGGCCAACAATGGGGGATGTCTTATGGAACTTGGAATATGTTCTTCAACTACAGATCGGGCCATCAAATGAACCATCAGAACCTGTGGACATGGACGACTCCGACTTTCCAACATCCACAGCTATTCATCCAAGCAACATGAGGAGACATTCAGAAGAAGGTACTGATAATTTTTCAGACATTAGTACAACCAAAGTTTTCTCTCAGTTGCTTACTAATGATGGAAGATAG 1836 43.25 MAIFTSLFLHFLFLFLPFLSADFVPSDIFLLSCGSSSNSSFFNRIFVGDSLKPTSDFLAAGKSVALSDRNPPPDSPSLYHTARVFTRVSSYKFNIKKNGTHLLRFHLSPFSSPGFALHSANFTISANGVFLSSISHVNDSVIKEFMVRIDTNVLEIEFQPASSSGFGFANAIEVFSAPKELITDNGAKLVDSDGGREYYKLTSQILETKYRINVGGPKLTPFNDTLWRTWVPDEPYLALKSAAKLASTFHTPNYEPGGPTREVAPDTVYMTAQQMNKDNSISGAKFNLTWNFPLDSNGVNHLVRLHFCDIVSSALNQLYFNVYINGYPAYRDLDLSSLSLQLSTPFYIDFIVDSGSSGDIQISVGPSDLSSSLRYNAILNGAEIMEMVNSKDMFTEIEKRKRNLWVIVGPVVGGFIGLCLIVAAIVAFGCKRRKKRKPKRAESAGWTSVQAYGGGSSDNVYSFGVVLFEVLCARPAVDPLLAREQVNLAEWALHWQRKGMLEKIVDPHLVGQINPNSLKKYGETAEKCLADYGIDRPTMGDVLWNLEYVLQLQIGPSNEPSEPVDMDDSDFPTSTAIHPSNMRRHSEEGTDNFSDISTTKVFSQLLTNDGR* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7168049 7170532 + Chy6G114990.1 Chy06g00971 228680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00971 611 Gene3D - 206 388 - -
Chy06g00971 611 Gene3D - 28 178 - -
Chy06g00971 611 PANTHER OS07G0166700 PROTEIN 16 442 IPR045272 GO:0004714|GO:0006468
Chy06g00971 611 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 16 442 - -
Chy06g00971 611 Gene3D Transferase(Phosphotransferase) domain 1 423 553 - -
Chy06g00971 611 PANTHER OS07G0166700 PROTEIN 459 563 IPR045272 GO:0004714|GO:0006468
Chy06g00971 611 SUPERFAMILY Protein kinase-like (PK-like) 457 561 IPR011009 -
Chy06g00971 611 MobiDBLite consensus disorder prediction 557 596 - -
Chy06g00971 611 Pfam Malectin-like domain 31 386 IPR024788 -
Chy06g00971 611 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 459 563 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00971 - - - csv:101211413 826.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00971 Chy-Chr6:7168049 Chy11g01261 Chy-Chr11:18749914 3.78E-132 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g749 . . . Bda07g01898 Bpe03g00149 . . Bma14g02048 Cmo16g00112 Cmo18g01293 . . . . . . Cpe14g00089 . . . . . . . . . . . . . . . . . . Lsi05g01200 . . . . Blo09g00068 . . . . . . . . . Cma16g00104 Cma18g01264 Car16g00093 Car18g01174 Cpe09g00072 . . . . . . . . Cla05g00907 . . . . . . . Csa03g01740 Chy06g00971 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009011 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 0 0 1 0 1 0 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00971 Chy_Chr06 FPKM 10.186739 10.857455 11.783742 12.402454 9.599381 10.003071 11.946549 15.954959 14.062553 13.542