Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00975 ATGGCATTCAACTCATCTTCCATTCCCTCATGGCTCTCCACCCGGACCTCATTCGGAGTCAAACTATGGGTTTTGATTCTTACTTCTCTTCTCATTTTTCTTCTTTTCGTTCTCATTCTCGCCTTCTTTTTTCACATCTATTCTCGTCGGAGCAACCGGAATTGGAATCGAAACCGTCCAAGCAATGATCGTGAAGCTGCCATTTCGGCCGAAGTTCGTCCGGAGATGGAGATGAAGGTAAAGAAGGGTTCCGATCATCAATTTTCACGCCAGGGTAGTCTGACTACTCAGCAAAGTATTGTCACTGATTGGGATTATTCTGCCGGCCAATACTCTCCCAAGGCGTTTAAGGACCGGCGGAGAAGGAGCACATTTTCGCTGGAAGAGATTGATTTCGCGACGGATGGATTCAACGAAGAGAATCTCATTAGCATCGAAGATTTCGGTGTGGATTACTTTGGAAATATGACTGATGATACAAAAGTGATTGTTAAGATATTCAATGCAAATTACAGTTCTGGAGACGACGAGTTCATCAGAGAAGCAGAGAGAATTCGGCATATTAGCCATAAAAATCTGGTCAAGTTGCTTGGATACTGCACCCAGGGAATTCCTAATAATAGGATGTTTGTTTATCAAAATGTGGACAATGGGAATTTGCATCAGTGGCTTCATGGATATCCACAGAAACCATTTAGCCCTCTGACTTGGTCCATTAGGATGAACATTATTCAAGGAATTGCAAAAGGATTAGCATATCTTCATGAAGATGTAGAACCACAAATTCTTCATGGCAGGCTTAGATCCAACTGCATATTACTTGATCAGTACTGGAATCCCAAGATTGCGAATTTCGGACTAGTTGAGCTTTTGCCTTTGGATTACTGGCCTGGACCTTTGGTTAGAGAAACGTATGAATCTCTTGATCAGAATGAATCAATTAGTCCATTCACAAAGGAGAATGATGTTTATAGCTTTGGTATACTTCTCATGGAGATGATAACTGGAAAACCTCCTTCGGACTGCAATCAATCACAGCCAGATTTGATAGAGTGGGTGAAGTCAATGATTGGGAATCAACAGGCATTTGAAACAGTGGATACCAAATTGGAAGAAAAACCATCATCAAAACAACTTAAACGGATGCTATTAATTGCTCTTCGCTGTGTTGATCCAGACATACAGCATAGGCCCACTATGGCCCAAATCCTGCTCATGCTTCAACCTCAAGACATTTTACTCACCGATGGCTGTCAAATCGGAATGAGTAAGTTCTTGTGA 1281 41.84 MAFNSSSIPSWLSTRTSFGVKLWVLILTSLLIFLLFVLILAFFFHIYSRRSNRNWNRNRPSNDREAAISAEVRPEMEMKVKKGSDHQFSRQGSLTTQQSIVTDWDYSAGQYSPKAFKDRRRRSTFSLEEIDFATDGFNEENLISIEDFGVDYFGNMTDDTKVIVKIFNANYSSGDDEFIREAERIRHISHKNLVKLLGYCTQGIPNNRMFVYQNVDNGNLHQWLHGYPQKPFSPLTWSIRMNIIQGIAKGLAYLHEDVEPQILHGRLRSNCILLDQYWNPKIANFGLVELLPLDYWPGPLVRETYESLDQNESISPFTKENDVYSFGILLMEMITGKPPSDCNQSQPDLIEWVKSMIGNQQAFETVDTKLEEKPSSKQLKRMLLIALRCVDPDIQHRPTMAQILLMLQPQDILLTDGCQIGMSKFL* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7208470 7211673 - Chy6G115030.1 Chy06g00975 228684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00975 426 PANTHER OS01G0323000 PROTEIN 2 419 - -
Chy06g00975 426 SUPERFAMILY Protein kinase-like (PK-like) 121 408 IPR011009 -
Chy06g00975 426 Pfam Protein tyrosine and serine/threonine kinase 157 405 IPR001245 GO:0004672|GO:0006468
Chy06g00975 426 Gene3D Phosphorylase Kinase; domain 1 103 213 - -
Chy06g00975 426 Gene3D Transferase(Phosphotransferase) domain 1 215 415 - -
Chy06g00975 426 ProSiteProfiles Protein kinase domain profile. 137 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00975 426 PANTHER BNAC04G54280D PROTEIN 2 419 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00975 - - - csv:101210355 799.275
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00975 Chy-Chr6:7208470 Chy03g01555 Chy-Chr3:17717842 3.38E-81 dispersed
Chy06g00152 Chy-Chr6:1007186 Chy06g00975 Chy-Chr6:7208470 1.48E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g760 . . . . . . . . . . . . . . . . Cpe14g00085 . . . . . . . . . . . . . . . . . . Lsi05g01195 . . . . . . . . . . . . . . . . Car16g00090 Car18g01179 . . . . . . . . . Cla05g00913 . . . . . . . . Chy06g00975 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013667 0 0 0 0 0 1 2 0 1 1 1 1 0 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71328 PF07714 PK_Tyr_Ser-Thr 1.10E-30 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00975 Chy_Chr06 FPKM 3.31475 4.3828 5.776798 6.090299 4.355207 3.738373 4.327047 7.85417 6.752822 7.243715
Chy06g00975 Chy_Chr00 FPKM 8.275926 9.906745 11.824436 9.398425 9.17748 7.651404 13.054845 20.090866 24.132311 22.919725