Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00977 ATGGCGGACGTGCAGATGGCGGATGCTGAGACCTTCGCCTTTCAGGCTGAGATTAACCAGCTTCTCAGTTTGATTATCAATACTTTCTACAGCAACAAGGAGATTTTCCTTCGAGAGCTTATCAGCAATTCCTCTGACGTGAGTTTTTCTTCTTCTTCTTCTTCTTGTATCTTCTTTACATTGAATGCATTGGACAAGATTCGATATGAGAGTTTGACAGACAAGAGCAAACTCGACGGACAACCAGAGCTCTTCATCAGAATTGTTCCGGACAAGGTTAACAAAACTCTCTCCATCATCGACAGTGGAGTCGGAATGACTAAAGCAGATTTGGTGAATAATTTGGGAACCATCGCAAGGTCGGGTACCAAAGAATTCATGGAGGCATTGCAGGCCGGCGCCGATGTGAGCATGATTGGTCAATTTGGTGTAGGGTTCTATTCGGCTTACCTTGTGGCCGAGAAGGTGATTGTTACCACGAAGCATAACGATGATGAACAATACATATGGGAATCACAGGCCGGTGGTTCTTTCACCGTCACAAGGGATGTAAATGGAGAGCAACTCGGGAGGGGTACCAAGATCACTCTCTTCCTTAAGGAGGATCAGTTGGAGTATTTGGAAGAGAGGAGAATTAAGGATCTTGTGAAGAAGCACTCTGAATTCATTAGCTACCCCATCTACCTTTGGGTTGAGAAAACAACCGAGAAGGAGATTAGTGACGATGAGGACGATGAACCTAAAAAGGAAGAAGAAGGAAACGTTGAAGAGGTGGATGAGGAAAAGGAAACCAAGCCAAAGAAGAAGAAGATCAAAGAGGTTTCTCACGATTGGGAACTCATCAACAAGCAGAAACCCATTTGGCTGCGCAAGCCTGAAGAAATTACCAAAGACGAATATGCATCATTCTACAAGAGCTTGACAAACGATTGGGAGGAGCACCTTGCAGTGAAACACTTCTCTGTTGAGGGACAGCTTGAGTTCAAAGCAATTCTCTTTGTCCCAAAGAGAGCTCCATTTGATCTTTTCGACAACCGTAAGAAAATGAACAACATAAAGCTGTATGTGAGAAGAGTGTTCATCATGGACAATTGTGAGGAGCTGATCCCCGAGTATCTTGGATTTGTTAAAGGCGTAGTTGATTCCGATGATTTGCCGCTCAATATCTCACGTGAGATGTTGCAGCAGAACAAGATTTTGAAGGTGATTAGAAAGAATTTAGTGAAGAAGTGCATAGAGATGTTCAATGAGATAGCAGAGAACAAGGAGGACTACAACAAGTTCTATGAAGCTTTTTCTAAGAACTTGAAGTTGGGTATCCACGAAGACAGCCAAAACAGAGCCAAATTGGCTGACTTGCTTCGATTCTACTCGACCAAAAGTGGAGATGAAATGACAAGCTTGAAGGATTATGTCATCAGGATGAAGGAAGGTCAGAAAGATATTTACTACATCACTGGTGAGAGCAAAAAGGCAGTTGAGAATTCTCCCTTCTTGGAGCGCTTGAAGAAGAAAGGCTATGAGGTGCTTTTCATGGTCGACGCCATTGATGAATATGCTGTTGGGCAACTGAAAGAGTACGAGGGCAAGAAGCTAGTCTCTGCAACCAAGGAAGGACTCAAGCTTGATGATGAAACCGAAGAAGAGAAGAAGAAAAAGGAGGAAAAGAAGAAGTCTTTTGAGAACCTATGCAAGACCATCAAGGACATCCTTGGCGACAAAGTAGAGAAGGTCGTCATTTCTGACAGAATTGTGGACTCTCCTTGCTGCTTGGTCACCGGCGAATATGGTTGGACTGCAAACATGGAGAGAATCATGAAGGCTCAAGCTCTAAGAGATAACAGCATGGGCGCTTACATGTCAAGCAAGAAGACGATGGAGATCAATCCAGACAATGGAATCATGGAGGAGTTAAGAAAAAGAGCCGAAGCAGACAAAAACGACAAATCCGTCAAGGACTTAGTTATGCTACTCTTTGAAACTGCTCTGTTAACATCTGGTTTCAGCCTTGATGATCCTAACACATTTGCTGCAAGGATCCACAGAATGTTGAAACTTGGTCTTAGCATTGATGAAGAAGAAAATGAAGGAGATGACGCAGACATGCCTGCTTTAGAAGAAGATGCTGCTGAAGAGAGCAAAATGGAGGAGGTAGACTAA 2160 43.43 MADVQMADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDVSFSSSSSSCIFFTLNALDKIRYESLTDKSKLDGQPELFIRIVPDKVNKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDVNGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWVEKTTEKEISDDEDDEPKKEEEGNVEEVDEEKETKPKKKKIKEVSHDWELINKQKPIWLRKPEEITKDEYASFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDNRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKLADLLRFYSTKSGDEMTSLKDYVIRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTIKDILGDKVEKVVISDRIVDSPCCLVTGEYGWTANMERIMKAQALRDNSMGAYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVMLLFETALLTSGFSLDDPNTFAARIHRMLKLGLSIDEEENEGDDADMPALEEDAAEESKMEEVD* 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7224345 7227224 + Chy6G115050.1 Chy06g00977 228686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00977 719 MobiDBLite consensus disorder prediction 691 719 - -
Chy06g00977 719 ProSitePatterns Heat shock hsp90 proteins family signature. 30 39 IPR019805 GO:0005524|GO:0006457|GO:0051082
Chy06g00977 719 PANTHER HEAT SHOCK PROTEIN 90-1 1 718 - -
Chy06g00977 719 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 718 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Chy06g00977 719 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 10 234 IPR036890 -
Chy06g00977 719 PRINTS 90kDa heat shock protein signature 209 227 IPR020575 -
Chy06g00977 719 PRINTS 90kDa heat shock protein signature 10 30 IPR020575 -
Chy06g00977 719 PRINTS 90kDa heat shock protein signature 191 208 IPR020575 -
Chy06g00977 719 PRINTS 90kDa heat shock protein signature 31 53 IPR020575 -
Chy06g00977 719 PRINTS 90kDa heat shock protein signature 139 161 IPR020575 -
Chy06g00977 719 SUPERFAMILY Ribosomal protein S5 domain 2-like 283 538 IPR020568 -
Chy06g00977 719 Gene3D - 451 537 - -
Chy06g00977 719 Gene3D - 282 450 - -
Chy06g00977 719 CDD HATPase_Hsp90-like 19 223 - -
Chy06g00977 719 MobiDBLite consensus disorder prediction 238 258 - -
Chy06g00977 719 Hamap Chaperone protein HtpG [htpG]. 7 685 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Chy06g00977 719 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 202 IPR003594 -
Chy06g00977 719 SUPERFAMILY HSP90 C-terminal domain 562 684 IPR037196 -
Chy06g00977 719 MobiDBLite consensus disorder prediction 238 268 - -
Chy06g00977 719 PIRSF HSP90_HTPG 1 719 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Chy06g00977 719 Gene3D - 7 249 IPR036890 -
Chy06g00977 719 MobiDBLite consensus disorder prediction 692 719 - -
Chy06g00977 719 Pfam Hsp90 protein 205 714 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Chy06g00977 719 SMART HKATPase_4 32 203 IPR003594 -
Chy06g00977 719 Gene3D - 538 689 IPR037196 -
Chy06g00977 719 Coils Coil 543 563 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00977 K04079 HSP90A, htpG; molecular chaperone HtpG - csv:101210914 1247.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00977 Chy-Chr6:7224345 Chy08g01039 Chy-Chr8:17510340 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g762 Blo06g01136 Blo15g00109 . . . . . . Cmo16g00105 . . . . . . . Cpe14g00083 . . . . . . . . . . . . . . Cone1ag1191 Cone5ag0892 . . Lsi05g01193 . . . . . . Bda15g00711 . Bpe12g00442 Bma08g00293 . . . . Cma16g00098 . Car16g00088 . . . . . . . . . . . . . . . . . . Csa03g01748 Chy06g00977 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00977 Chy_Chr06 FPKM 4.513239 4.236996 2.599563 2.754601 3.589237 3.071055 3.307472 0.572495 0.638082 0.646609
Chy06g00977 Chy_Chr00 FPKM 2.582389 3.438436 2.533181 2.491054 5.782521 5.271327 4.729148 1.125889 1.262617 1.107001
Chy06g00977 Chy_Chr00 FPKM 2.582389 3.438436 2.533181 2.491054 5.782521 5.271327 4.729148 1.125889 1.262617 1.106927