Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00979 ATGGAATCAAAGAACCCTAATAATCAACGACTCAACAATCACGACAACATCCAGAGGCCAAGTCCAAAAGCCGTATACAGCAGGATTATAACGAGAATCTTGGCATTCGTCGGAATTCCGATGGCGTTCGGTGTGACGTTGTTGAAGATTTTCCAAGCGATTAAGGAGCAAAACCTTTGGGATGTGCCTATTTGGGTGCCATTTTTTACGACTTTCTTGACATTCGGAGCTTCAACGATGGGGATTGCTTACGGGACGTTATCGACGAGTTTGGATCCGGAGAAGAAAGGATCTTTGTTGGGATGGGCAGAGGCGCAGAAGAATTGGGTTGAAATGTGGAAGGAGGAAGATGAAGCCCGGCGCTGA 366 46.72 MESKNPNNQRLNNHDNIQRPSPKAVYSRIITRILAFVGIPMAFGVTLLKIFQAIKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLLGWAEAQKNWVEMWKEEDEARR* 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7241101 7241578 - Chy6G115070.1 Chy06g00979 228688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00979 121 Pfam Photosynthesis affected mutant 68 7 115 IPR021855 -
Chy06g00979 121 PANTHER PROTEIN PAM68, CHLOROPLASTIC 7 119 IPR021855 -
Chy06g00979 121 PANTHER EXPRESSED PROTEIN 7 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00979 - - - csv:101218962 206.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00371 Chy-Chr5:4016652 Chy06g00979 Chy-Chr6:7241101 3.11E-68 dispersed
Chy06g00979 Chy-Chr6:7241101 Chy06g02194 Chy-Chr6:26162493 8.81E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g772 . . . . Bpe03g00156 . . Bma14g02041 . Cmo18g01303 . . . . . . . . . . . . . . . . . . . . . Cone1ag1194 . . . Lsi05g01189 . . . . Blo09g00060 . . . . . . . . . . Cma18g01272 . Car18g01185 Cpe09g00064 . . . . . . . . Cla05g00918 Cam05g1006 Cec05g1010 Cco05g1006 Clacu05g0993 Cmu05g0949 Cre05g1030 . . Chy06g00979 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012150 0 0 1 1 2 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00979 Chy_Chr06 FPKM 4.791254 4.215365 4.881184 5.028906 3.236635 3.270161 3.349896 4.564926 3.721987 4.669815
Chy06g00979 Chy_Chr00 FPKM 5.034172 4.73065 7.610101 7.529336 4.831124 4.783007 4.846519 6.733361 5.276551 7.129229