Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00981 ATGGCTGCAAATGATGTTCCATGCTGTGAGCCAAGGTTCTGGATGTATCTTTTGATATGTGTAGGTTTGGTTGCTTTTGCTGGCCTTATGTCGGGGCTTACGCTCGGACTTATGTCGCTCAGCTTGGTTGATCTCGAGGTTCTTGTCAAATCTGGCAGGCCCGACGACCGAAAAAATGCTGCTAAAATTCTGCCCATAGTAAAGAACCAGCATTTGCTTCTTTGCACACTACTCATAAGCAATGCTATGGCAATGGAGGCCCTGCCTATCTTCATTGATGCACTTCTACCAGCTTGGGGTGCAATTGTGATATCAGTCACTCTCATACTAACTTTTGGAGAGATTATTCCTCAAGCTATATGTTCAAGGTATGGGCTGAGTGTTGGCGCTAAGCTGTCAGTCGTTGTTCGGGTGCTTCTCTTAGTCCTATTTCCTTTGTCTTACCCCATCAGTAAGTTATTAGATTGGCTTCTGGGCAAGGGGCATTTTGCACTTCTAAGAAGGGCAGAGCTCAAGACATTTGTGGATATGCATGGGAATAAGGCAGGGAAAGGTGGAGAATTGACTCAAGAAGAAACTACCATAATCACTGGAGCTTTGGACATGACACTCAAAACTGTCAAAGATGCTATGACTCCATTAACCAAAGTGTTCTCACTTGATATAAATTCCAAACTTAATGAGAAAACCATGGAGCTGATTTTAAGAAAAGGACATAGTCGAGTGCCAATATACTCGGGATATCCAACTAATATCATTGGTATTATTTTGGTTAAAAATCTGATCAAATTTCATCCAGAGGATGAAACTCCCATCAGAAATCTCACCATCAGAAAAGTTCCAAGGGTTCATGAGAACTTACCTTTGTATGACATTTTGAACCAATTCCAACAAGGACATAGTCATATGGCTGTCGTCATAAAGAGTCATAATGAAGCCAAAGGGCCTGCAGAACTCGGAACGGCGATACCGGTAACTGAGACAGAGTTGGGACATATTAAGCTGCAAATAGGGAATATTTGCTCTAATGATAGTACTGATACTGATGGAAAATCAATGCCAGATTTTGATGAAGATGTTATTGGTATAATAACATTGGAGGATGTCATGGAAGAACTTTTACAGGAAGAGATATTGGATGAGACTGATGAATATGTTGCTGTCCACAACAAGCTGAAAGTGAACATGAAAGTAAGGAGATCAACATCGGAATCACCAGGAGGACCTCATCTGCAATGGATATCACCAGTGGCATCCCCATTATCTTCGTACCATCATTCTCCACTTTCTTCTTCATACAATCACTCACCAATACTTCATTCTCCAATTCCTCCACATATTCACTCCCCATTTAATCCACCATCCCTCTCTTCTTCCCCTAGAAATTACTTTCACTCTTCTCCAACTCCATGCTCTGTTCCTTCTCTTTCTGCTTCACCTTCTCATAAGATTTCAAGGAAATCATATGAGAAGCTGAAGAAGCCAGATGGATCATAG 1497 41.48 MAANDVPCCEPRFWMYLLICVGLVAFAGLMSGLTLGLMSLSLVDLEVLVKSGRPDDRKNAAKILPIVKNQHLLLCTLLISNAMAMEALPIFIDALLPAWGAIVISVTLILTFGEIIPQAICSRYGLSVGAKLSVVVRVLLLVLFPLSYPISKLLDWLLGKGHFALLRRAELKTFVDMHGNKAGKGGELTQEETTIITGALDMTLKTVKDAMTPLTKVFSLDINSKLNEKTMELILRKGHSRVPIYSGYPTNIIGIILVKNLIKFHPEDETPIRNLTIRKVPRVHENLPLYDILNQFQQGHSHMAVVIKSHNEAKGPAELGTAIPVTETELGHIKLQIGNICSNDSTDTDGKSMPDFDEDVIGIITLEDVMEELLQEEILDETDEYVAVHNKLKVNMKVRRSTSESPGGPHLQWISPVASPLSSYHHSPLSSSYNHSPILHSPIPPHIHSPFNPPSLSSSPRNYFHSSPTPCSVPSLSASPSHKISRKSYEKLKKPDGS* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7253509 7263319 - Chy6G115090.1 Chy06g00981 228690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00981 498 MobiDBLite consensus disorder prediction 452 483 - -
Chy06g00981 498 CDD CBS_pair_CorC_HlyC_assoc 206 371 IPR044751 -
Chy06g00981 498 ProSiteProfiles CBS domain profile. 211 272 IPR000644 -
Chy06g00981 498 SUPERFAMILY CBS-domain pair 196 375 IPR046342 -
Chy06g00981 498 ProSiteProfiles CNNM transmembrane domain profile. 9 192 IPR002550 -
Chy06g00981 498 MobiDBLite consensus disorder prediction 444 498 - -
Chy06g00981 498 MobiDBLite consensus disorder prediction 484 498 - -
Chy06g00981 498 Pfam Cyclin M transmembrane N-terminal domain 18 188 IPR002550 -
Chy06g00981 498 Gene3D - 190 381 IPR046342 -
Chy06g00981 498 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 491 IPR045095 GO:0010960
Chy06g00981 498 Pfam CBS domain 207 264 IPR000644 -
Chy06g00981 498 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00981 K16302 CNNM; metal transporter CNNM - csv:101210102 837.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00511 Chy-Chr4:4991109 Chy06g00981 Chy-Chr6:7253509 1.94E-168 dispersed
Chy06g00981 Chy-Chr6:7253509 Chy11g01433 Chy-Chr11:21106992 8.06E-139 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g773 . . . . Bpe03g00157 . . . Cmo16g00103 . . . . . Sed13g0543 . Cpe14g00080 Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . Cone1ag1195 . . Cone15ag0060 Lsi05g01188 . . . . Blo09g00058 . . . . . . . . . Cma16g00096 . Car16g00086 . . . . . . . . . . Cla05g00919 Cam05g1007 Cec05g1011 Cco05g1007 Clacu05g0995 Cmu05g0950 Cre05g1031 . Csa03g01752 Chy06g00981 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007021 1 9 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00981 Chy_Chr06 FPKM 19.376875 24.874636 28.19713 26.133171 41.697521 47.153648 44.10265 26.238867 30.7847 30.127192
Chy06g00981 Chy_Chr00 FPKM 26.370575 30.937134 24.959579 21.258324 34.600346 38.541885 38.51059 22.023912 26.765596 25.286942
Chy06g00981 Chy_Chr00 FPKM 20.730736 19.844225 13.675362 12.538779 22.387714 20.439913 22.36582 12.895578 14.324824 16.208385