Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00989 ATGGAAAAAGACCAACCACAGCCACAAGCAGAACCACCACCTCCGCCGCCGCCGCCACCACTGCCGCCAAGAAGCTACACATTAACAGCATCCTCAATCTCCTACACAAAATCCACCACCATCTCACCCTACAACTGCCTCTTCAAATCCTGCATCACCACCACCCAACCCACCTACATTCTCCGTAACATTTCCTTCACAGCCCACCCTTCCCAAATCCTCGCCATCGTCGGCCCAAGCGGCGCCGGCAAATCAACTCTCCTCGACATCCTCTCTGCCCGTACCTCCCCAACCCAAGGCTCCCTCTTCCTCAACTCCTCCCCTCTTAACCCTTCCACCTTCCGTAAACTCTCCGCCTACGTCCCTCAACACGACGCCTCTCTCCCTCTCTTAACCGTCTCTGAAACCTTCACCTTTGCTGCCCGCCTCCTCCTCCCTAACAAAACCCTAATCCCCTCCACTGTCAACTCCCTTCTCTCCGACCTCCGTCTCTCCCACCTCGCCAACACTCGCCTCATCTCCGGCCTCTCTGGTGGTGAACGTCGCCGCGTATCTATCGGCCTCGCTCTCCTCCACGATCCAGCTGTCTTACTTCTCGACGAACCAACCTCCGGCCTCGACAGCGGGTCCGCGTATAATGTGATATCGACCCTTAAATCGATATGCGAGTCGAGGAATCGGACGGTGGTGGTTTCAATTCATCAGCCGAGTTATCGGATACTGTCAGAGATTGATGGGATACTTTTGCTATGTAAAGGATGTGTGATTCATCATGGGAGTGTTGAGAGTTTGGAGAGTTATTTGACATCGAAGGAGTTATGTATTCCGCCGCAGCTTAATGCTTTGGAATTTGCTATGGAAATTATTAATGATCTTACGCCTTGTAATAAGGGTGTTGTGATTATTGGTAATGAAGGTGGTAACTATTGTTCGAATTATCATGAAGATAATGATAATAATATTGATAACAATGAGATTAAATATCGGAGCTGTAGATTGCATGAGATTTTGACGCTTCATTGGAGATTTTGGATTATTATATTTCGAACGAGGCAGCTGCTTTTGACTAATACTTTGGAGGCTCTTATTGTTGGAATTGTGTTAGGAACAATTTACATAAACATCGGAATGGACAAAGCCGGCATAGAGAAAAGATTTGGTCTATTCGCCTTCACACTAACATTCCTCCTCTCTTCCACAACCGAAACTCTTCCTATTTTCCTCAACGAACGTCCAATTCTCCTCCGTGAAACCTCCTCCGGCCTCTACCGTCTCTCCTCCTACATTATCGCCAACACCCTCGTCTTCCTCCCCTACCTCCTCGCCATCGCCCTCATCTACTCCGCCTCCGTCTACTTCCTCGTCGGCCTCTGTGCCACTTGGCAAGCTTTCGCCTACTTCGTCCTAGTCATTTGGGTCATCATTCTAATGGCCAACTCCTTTGTTCTCTTCCTAAGCTCCCTCGCCCCAAACTACATAGCCGGGACGTCGCTCGTGACAGTTCTCCTCGCTGCGTTTTTCCTATTCTCGGGTTACTTCATATCACAAGAAAGCTTGCCTAAGTTTTGGATGTTTATGAACTTCATGTCGATGTACAAGTACGCTCTTGATGCATTGCTAATCAACGAATATTCGTGTTTGGTTTCTAGATGCTTCATTTGGTTTGAAGAGAATGAAAAGGAATGTTTGGTTACGGGGGGAGATGTGTTGGTTAAAAGAGGTCTTGATCAGAACCAACGTTGGAGAAATGTTTATGCTTTGGTCGCGTTTTTTGTGTTATATCGTCTTCTTTGTTTGCTTGTTTTGCTTAGAAGGGTTTCTACATCTAAGAAATAA 1836 47.49 MEKDQPQPQAEPPPPPPPPPLPPRSYTLTASSISYTKSTTISPYNCLFKSCITTTQPTYILRNISFTAHPSQILAIVGPSGAGKSTLLDILSARTSPTQGSLFLNSSPLNPSTFRKLSAYVPQHDASLPLLTVSETFTFAARLLLPNKTLIPSTVNSLLSDLRLSHLANTRLISGLSGGERRRVSIGLALLHDPAVLLLDEPTSGLDSGSAYNVISTLKSICESRNRTVVVSIHQPSYRILSEIDGILLLCKGCVIHHGSVESLESYLTSKELCIPPQLNALEFAMEIINDLTPCNKGVVIIGNEGGNYCSNYHEDNDNNIDNNEIKYRSCRLHEILTLHWRFWIIIFRTRQLLLTNTLEALIVGIVLGTIYINIGMDKAGIEKRFGLFAFTLTFLLSSTTETLPIFLNERPILLRETSSGLYRLSSYIIANTLVFLPYLLAIALIYSASVYFLVGLCATWQAFAYFVLVIWVIILMANSFVLFLSSLAPNYIAGTSLVTVLLAAFFLFSGYFISQESLPKFWMFMNFMSMYKYALDALLINEYSCLVSRCFIWFEENEKECLVTGGDVLVKRGLDQNQRWRNVYALVAFFVLYRLLCLLVLLRRVSTSKK* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7313070 7316229 - Chy6G115170.1 Chy06g00989 228698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00989 611 MobiDBLite consensus disorder prediction 7 25 - -
Chy06g00989 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 277 IPR003439 GO:0005524
Chy06g00989 611 ProSitePatterns ABC transporters family signature. 176 190 IPR017871 GO:0005524
Chy06g00989 611 Gene3D - 45 274 IPR027417 -
Chy06g00989 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 13 606 - -
Chy06g00989 611 Pfam ABC-2 type transporter 234 293 IPR043926 GO:0140359
Chy06g00989 611 Pfam ABC-2 type transporter 335 544 IPR013525 GO:0016020|GO:0140359
Chy06g00989 611 SMART AAA_5 70 262 IPR003593 -
Chy06g00989 611 MobiDBLite consensus disorder prediction 1 27 - -
Chy06g00989 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 267 IPR027417 -
Chy06g00989 611 Pfam ABC transporter 61 204 IPR003439 GO:0005524
Chy06g00989 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 13 606 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00989 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101208704 1075.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00165 Chy-Chr5:1305351 Chy06g00989 Chy-Chr6:7313070 4.26E-171 dispersed
Chy06g00989 Chy-Chr6:7313070 Chy07g00997 Chy-Chr7:14688074 3.69E-160 dispersed
Chy06g00989 Chy-Chr6:7313070 Chy04g02113 Chy-Chr4:26446915 1.28E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g798 . . Bda05g00099 . Bpe03g00256 . . . Cmo16g00094 Cmo18g01312 . . . . . . Cpe14g00074 Bhi01g01422 . . . Hepe07g0110 Mch10g0112 . . . . . . . . . . Cone14ag0047 Cone15ag0051 Lsi05g01179 . . . Blo07g00359 . . . . . . . . . . Cma16g00090 Cma18g01281 Car16g00080 . Cpe09g00057 . . . . . . . . Cla05g00929 Cam05g1016 Cec05g1020 Cco05g1016 Clacu05g1005 Cmu05g0958 Cre05g1039 . Csa03g01761 Chy06g00989 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010883 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00989 Chy_Chr06 FPKM 2.038114 1.857746 0.106307 0.110092 10.542895 12.284556 11.699657 0.0 0.0 0.0
Chy06g00989 Chy_Chr00 FPKM 1.293099 1.834932 0.056519 0.088774 7.576354 8.622694 8.238969 0.0 0.0 0.0