Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01010 ATGGATATTATGATGGATGGTCGTGGGGGTTATGGTGGTGGGTCACCTGATGAACAAGAAGGTTCTAATGATCGTAAGGGGAAAAAGACTTACCATCGTCATAATCCTTACCAGATTCAGCAGCTTGAATCATTTTTCAGGCAATGCCCACACCCTGATGAAAATCAGCGGCGCCAGCTGAGTCGAGAGCTTGGTCTTGAGACCAAACAGATCAAATTTTGGTTTCAAAACAAGAGGACTCAAACTAAGGCTCAGAATGAGCGAGCAGACAACTCTTCCCTTCGGACAGAGAATGAAAAGATTCAATGTGAAAACCTTGCAATTAGAGAAGCGTTGAGGAATGTGATCTGTCCATCCTGTGGAGGTCCACCTTTTGGAGAAGAAGAGCGACAACGCAATCTCCAAAAATTACGTCTTGAAAATTCTCACTTAAAAGAAGAGCATGAAAAAGTGTCTAACCTTCTTGCCAAGTACATTGGAAAACCAATATCACAACTTGAATCACTATTGCCTGTTCTTGGGTCTTCACTTGATTTGTCACCAAGAAGTTCCCTTACTCAAATAGTTCCAAGTCCTGCAGTCGATCTTATTTCTGATCCAGTAATATTAGATGGAGCAGCAACACCTTACCAATCAAGAGGTATTAATGATTTGGAAAATGCTCTTATGTTGGAAACTGCTGCAACTGGCTTGGAAGAGTTAATCAGACTTTTGAGGATCGATGAGCCTTTGTGGATGAAGACCCTGAATGATGGGAGGCATGTTCTCCATCGTGACAGCTACGAAAAGATATTTCCTCGACCCAATCACTTCAAAACATCTAGTGCTCGTACTGAATCATCGAAAGCTTTGGGAGTGGTGACAATGAGTGCAATTCAATTGGTTGATTTTTTTTTAGATGCGGATAAATGGGCAGACCTTTTTCCAACCATCATTACAAATGCAGAGACATTTCATATTATTGACCCTGGGATGCCTGGAAACCGCAGTGGTGCTTTGCAGTTGATGTATCAACAAATGCACATCTTTTCACCCCTCGTGTCTCCTCGAGACTTTTGCTTCCTTCGACATTGTCAGCAGATTGAGTTTGGTGTCTGGGTCATAGTGGATGTTTCGTATGAAATCTTAAAGGATTGTATCACCTCTGCACGATGCTGGAGGCTTCCTTCCGGGTGCTTGATTCAAGAAATGCCCAATGGTTGCTCTAAGGTTACCTGGGTTGAGCATGTGGAAGTGGATGATAAAACACAAACCCACCGGCTGTATCGAGATCTTGTATTCAATACTTTAGCATATGGAGCCGACCGATGGCTTTTCACTCTTCAAAGGATGTGTGAGAGATTGGCTTATACTTTCAGGGATTGTGCACCTAACCATGAACTTGGAGGAGTGTTAACTTCTCCTGAAGGGAGGAGGAGCATCATGAAGCTGTCACATAGAATGGTAAAAAATTTCTGTGGAATACTGAGCATGTCAGGTAAAATAGATTTCCCTCAGTTATCCGAAGTGAACAATAGTGGTGTTCGGATATCTGTTCGGATTAGCTCGGAACTGGGGCAGCCCAGTGGGACAGTCGTAAGTGCGGCAACATCTCTTTGGCTTCCCTTACCACCTGAAACCATCTTTAATTTCTTCAGGGATGAAAAGGCCAGAGTTCAGTGGGATGTTCTCTCTTATGGAAATCCAGTACATGAAATTGCACACATCTTAACAGGAGTTCATCCAGGAAACTTGATATCGATAATTCGGCCGTTCGTCCCGACTGAGAACAACATGCTGATTCTTCAAGAAAGCTGTATAGATCCATTAGGATCCTTGGTGATATATGCACCCATCGACATGCCTGCTATGAACATTGCAACAAGTGGTCAGGACCCATCAGAGATACCAATACTTCCATCAGGATTTGTAATCACAGGGGACGGCCGTACTCATTCCGGAATCGGAGCTTCAACGAGTGCTACCTTGGGGAGGCCAAGCGGGTCTTTGTTAACCATAGCTTTCCAGATATTGGTGTCCAGTGTATCATCTTCAAAACAGCTGAATGTGGAGTCTGTGGCAACAGTGAATACTCTTATCAGTGCCACAGTTCAAAGGATAAAGGTTGCATTGAATTGCTCTTGTTTGGATTGA 2133 43.46 MDIMMDGRGGYGGGSPDEQEGSNDRKGKKTYHRHNPYQIQQLESFFRQCPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTKAQNERADNSSLRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENSHLKEEHEKVSNLLAKYIGKPISQLESLLPVLGSSLDLSPRSSLTQIVPSPAVDLISDPVILDGAATPYQSRGINDLENALMLETAATGLEELIRLLRIDEPLWMKTLNDGRHVLHRDSYEKIFPRPNHFKTSSARTESSKALGVVTMSAIQLVDFFLDADKWADLFPTIITNAETFHIIDPGMPGNRSGALQLMYQQMHIFSPLVSPRDFCFLRHCQQIEFGVWVIVDVSYEILKDCITSARCWRLPSGCLIQEMPNGCSKVTWVEHVEVDDKTQTHRLYRDLVFNTLAYGADRWLFTLQRMCERLAYTFRDCAPNHELGGVLTSPEGRRSIMKLSHRMVKNFCGILSMSGKIDFPQLSEVNNSGVRISVRISSELGQPSGTVVSAATSLWLPLPPETIFNFFRDEKARVQWDVLSYGNPVHEIAHILTGVHPGNLISIIRPFVPTENNMLILQESCIDPLGSLVIYAPIDMPAMNIATSGQDPSEIPILPSGFVITGDGRTHSGIGASTSATLGRPSGSLLTIAFQILVSSVSSSKQLNVESVATVNTLISATVQRIKVALNCSCLD* 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7677758 7681575 - Chy6G115380.1 Chy06g01010 228719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01010 710 ProSiteProfiles START domain profile. 216 450 IPR002913 GO:0008289
Chy06g01010 710 Coils Coil 84 104 - -
Chy06g01010 710 Pfam Homeodomain 28 83 IPR001356 GO:0003677
Chy06g01010 710 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG12-RELATED 17 705 - -
Chy06g01010 710 SMART START_1 225 447 IPR002913 GO:0008289
Chy06g01010 710 CDD START_ArGLABRA2_like 221 446 - -
Chy06g01010 710 Pfam START domain 230 447 IPR002913 GO:0008289
Chy06g01010 710 Gene3D - 15 102 - -
Chy06g01010 710 SUPERFAMILY Bet v1-like 468 644 - -
Chy06g01010 710 SUPERFAMILY Homeodomain-like 13 86 IPR009057 -
Chy06g01010 710 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 705 IPR042160 -
Chy06g01010 710 Coils Coil 127 154 - -
Chy06g01010 710 Gene3D - 231 426 IPR023393 -
Chy06g01010 710 MobiDBLite consensus disorder prediction 1 31 - -
Chy06g01010 710 CDD homeodomain 28 86 IPR001356 GO:0003677
Chy06g01010 710 SUPERFAMILY Bet v1-like 219 449 - -
Chy06g01010 710 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Chy06g01010 710 SMART HOX_1 27 89 IPR001356 GO:0003677
Chy06g01010 710 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01010 Chy-Chr6:7677758 Chy12g01582 Chy-Chr12:19332505 0 dispersed
Chy06g01010 Chy-Chr6:7677758 Chy11g02014 Chy-Chr11:25991815 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18157 PF01852 START 1.80E-34 CL0209 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01010 K09338 - csv:101205899 1407.12